Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

61411404 .. 61414867

Gene Structure 3464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG396800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAAATAACGGGGACTATAGGCAGCACATTGCCTGATGGAGACTTGCAAACCAGACGTGTTAGGCGCATTGGCAATGAAATAACTCAGGGATTGATGAGAGGCATAACTAGGGAGGATCAAGAGAAGGGACGTCGGTGGTGGCGAGGCTCTAGAGCAGTCCTGATCCCCTGGGGAACGGGACTGGGCTCCAGAGTCGCCACTTCGCATTTGGATTTTTTGAAGTGGGAGTTCTATGTAGAGGATGATCCTGATGTCAATGCAGCTTGCTTGGCTGGCGGCAAGATTTTGGTTTCCACAGGGTTGCTTAGGTTGGAACTGGAGGCAGATTACATTGGGCTGTTGTTGCTTGCTTCGGCCGGATATGATCCTAGGGTTGCTCTAGATGTGTGCCAGAAGTACAGCAAGCTTGTTGGTGAATCTCCAAACCAGAAAGATTATCTTTCTACCCATCCAACCGAGAAAAAGAGAGCTGAAAAGCTGGCTCAATCTCACGTCATGGAAGAAGCACTCTCTATATACAGGGATGTACAAGCTGGACGAGGGGCCGGGCAGGATAGTGCACTTTCGGAGCGTGCTAGGCTGATTGGCAAGGCTATTCTTGAGGCATTGAAGATAGGGTTGAGTCATTCGCATAGCTGGACCGATTGGACTGATGCCGAGACGGGTGTGATTCTCGATGAGCAGAGTAGTAGGAAGAAGAAGAAGGTGGGTGGCGCTACTTCGCATTTGGATGGTTTGAACTGGGAGATTTTGGTCCCGGAAAGTCCGAAAGACGCTGCAACGATTTGTTTACATGGTGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

269

Amino Acids

29.54

Weight (kDa)

7.74

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	106 - 162	7.7e-06	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	136
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	4 cut(s)	126, 160, 242, 362
AcoI	YGGCCR	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	133
AfaI	GTAC	2 cut(s)	401, 531
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	3 cut(s)	223, 613, 742
AjiI	CACGTC	2 cut(s)	59, 496
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	6 cut(s)	266, 409, 473, 481, 536, 639
AluI	AGCT	6 cut(s)	266, 409, 473, 481, 536, 639
Alw21I	GWGCWC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	36, 656
Alw44I	GTGCAC	1 cut(s)	561
AlwI	GGATC	4 cut(s)	126, 160, 242, 362
AoxI	GGCC	2 cut(s)	357, 546
ApaLI	GTGCAC	1 cut(s)	561
ApeKI	GCWGC	3 cut(s)	24, 263, 779
AspA2I	CCTAGG	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	69, 719
AspS9I	GGNCC	3 cut(s)	546, 642, 757
AsuC2I	CCSGG	2 cut(s)	550, 761
AsuHPI	GGTGA	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	642, 757
AvrII	CCTAGG	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	565
BbvI	GCAGC	3 cut(s)	36, 275, 766
BccI	CCATC	3 cut(s)	32, 459, 728
BciT130I	CCWGG	1 cut(s)	172
BcnI	CCSGG	2 cut(s)	550, 761
BcoDI	GTCTC	2 cut(s)	36, 656
BfaI	CTAG	5 cut(s)	111, 153, 372, 383, 579
BfmI	CTRYAG	1 cut(s)	18
BfoI	RGCGCY	1 cut(s)	720
BisI	GCNGC	4 cut(s)	25, 264, 280, 780
BlnI	CCTAGG	1 cut(s)	371
BlsI	GCNGC	4 cut(s)	26, 265, 281, 781
Bme1390I	CCNGG	3 cut(s)	172, 550, 761
Bme18I	GGWCC	2 cut(s)	642, 757
BmgBI	CACGTC	2 cut(s)	59, 496
BmgT120I	GGNCC	3 cut(s)	546, 642, 757
BmiI	GGNNCC	3 cut(s)	190, 547, 759
BmrFI	CCNGG	3 cut(s)	172, 550, 761
BmrI	ACTGGG	2 cut(s)	194, 754
BmsI	GCATC	1 cut(s)	646
BmuI	ACTGGG	2 cut(s)	194, 754
BpmI	CTGGAG	2 cut(s)	175, 341
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	2 cut(s)	550, 761
BsaHI	GRCGYC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	170, 171, 371
Bse1I	ACTGG	3 cut(s)	189, 324, 749
Bse3DI	GCAATG	2 cut(s)	29, 82
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	170, 171, 371
BseGI	GGATG	4 cut(s)	250, 451, 532, 739
BseMI	GCAATG	2 cut(s)	29, 82
BseMII	CTCAG	1 cut(s)	101
BseNI	ACTGG	3 cut(s)	189, 324, 749
BseSI	GKGCMC	1 cut(s)	565
BseX3I	CGGCCG	1 cut(s)	357
BseXI	GCAGC	3 cut(s)	36, 275, 766
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	359, 548
BsiEI	CGRYCG	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	565
BsiSI	CCGG	3 cut(s)	360, 549, 761
BslFI	GGGAC	4 cut(s)	28, 144, 195, 743
BsmAI	GTCTC	2 cut(s)	36, 656
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	4 cut(s)	28, 144, 195, 743
BsnI	GGCC	2 cut(s)	359, 548
Bsp1286I	GDGCHC	2 cut(s)	191, 565
Bsp1407I	TGTACA	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	118, 165, 247, 367
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	2 cut(s)	359, 548
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	190, 547, 759
BspPI	GGATC	4 cut(s)	126, 160, 242, 362
BsrDI	GCAATG	2 cut(s)	29, 82
BsrGI	TGTACA	1 cut(s)	529
BsrI	ACTGG	3 cut(s)	189, 324, 749
BssECI	CCNNGG	3 cut(s)	170, 171, 371
BssMI	GATC	4 cut(s)	118, 165, 247, 367
BssNI	GRCGYC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	371
Bst2UI	CCWGG	1 cut(s)	172
BstACI	GRCGYC	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	529
BstC8I	GCNNGC	6 cut(s)	268, 277, 351, 407, 483, 576
BstDEI	CTNAG	2 cut(s)	87, 308
BstF5I	GGATG	4 cut(s)	250, 451, 532, 739
BstH2I	RGCGCY	1 cut(s)	720
BstHHI	GCGC	2 cut(s)	69, 719
BstKTI	GATC	4 cut(s)	121, 168, 250, 370
BstMAI	GTCTC	2 cut(s)	36, 656
BstMBI	GATC	4 cut(s)	118, 165, 247, 367
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	4 cut(s)	272, 276, 346, 580
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	170, 548, 759
BstSFI	CTRYAG	1 cut(s)	18
BstSLI	GKGCMC	1 cut(s)	565
BstV1I	GCAGC	3 cut(s)	36, 275, 766
BstZI	CGGCCG	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	359, 548
BtrI	CACGTC	2 cut(s)	59, 496
BtsCI	GGATG	4 cut(s)	250, 451, 532, 739
Cac8I	GCNNGC	6 cut(s)	268, 277, 351, 407, 483, 576
CfoI	GCGC	2 cut(s)	69, 719
Cfr13I	GGNCC	3 cut(s)	546, 642, 757
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	2 cut(s)	400, 530
CviAII	CATG	2 cut(s)	499, 797
CviQI	GTAC	2 cut(s)	400, 530
DdeI	CTNAG	2 cut(s)	87, 308
DpnI	GATC	4 cut(s)	120, 167, 249, 369
DpnII	GATC	4 cut(s)	118, 165, 247, 367
EaeI	YGGCCR	1 cut(s)	357
EagI	CGGCCG	1 cut(s)	357
EclXI	CGGCCG	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	191
Eco47I	GGWCC	2 cut(s)	642, 757
Eco52I	CGGCCG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	191
ErhI	CCWWGG	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	2 cut(s)	502, 800
FaiI	YATR	9 cut(s)	20, 107, 237, 366, 500, 518, 520, 636, 798
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FaqI	GGGAC	4 cut(s)	28, 144, 195, 743
FatI	CATG	2 cut(s)	498, 796
Fnu4HI	GCNGC	4 cut(s)	25, 264, 280, 780
FokI	GGATG	4 cut(s)	257, 438, 539, 746
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	4 cut(s)	25, 264, 280, 780
FspBI	CTAG	5 cut(s)	111, 153, 372, 383, 579
GlaI	GCGC	2 cut(s)	68, 718
GluI	GCNGC	4 cut(s)	25, 264, 280, 780
GsuI	CTGGAG	2 cut(s)	175, 341
HaeII	RGCGCY	1 cut(s)	720
HaeIII	GGCC	2 cut(s)	359, 548
HapII	CCGG	3 cut(s)	360, 549, 761
HgaI	GACGC	1 cut(s)	785
HhaI	GCGC	2 cut(s)	69, 719
Hin1I	GRCGYC	1 cut(s)	133
Hin1II	CATG	2 cut(s)	502, 800
Hin6I	GCGC	2 cut(s)	67, 717
HinP1I	GCGC	2 cut(s)	67, 717
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	4 cut(s)	195, 419, 625, 673
HpaII	CCGG	3 cut(s)	360, 549, 761
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	563, 794
Hpy188I	TCNGA	2 cut(s)	571, 771
Hpy188III	TCNNGA	8 cut(s)	122, 153, 163, 192, 251, 383, 602, 677
Hpy8I	GTNNAC	2 cut(s)	563, 794
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	2 cut(s)	121, 700
HpyCH4IV	ACGT	3 cut(s)	58, 133, 495
HpyCH4V	TGCA	4 cut(s)	49, 263, 563, 782
HpyF10VI	GCNNNNNNNGC	4 cut(s)	272, 276, 346, 580
HpyF3I	CTNAG	2 cut(s)	87, 308
HpySE526I	ACGT	3 cut(s)	58, 133, 495
Hsp92I	GRCGYC	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	502, 800
HspAI	GCGC	2 cut(s)	67, 717
Kzo9I	GATC	4 cut(s)	118, 165, 247, 367
LmnI	GCTCC	2 cut(s)	194, 571
Lsp1109I	GCAGC	3 cut(s)	36, 275, 766
LweI	GCATC	1 cut(s)	646
MaeI	CTAG	5 cut(s)	111, 153, 372, 383, 579
MaeII	ACGT	3 cut(s)	58, 133, 495
MalI	GATC	4 cut(s)	120, 167, 249, 369
MboI	GATC	4 cut(s)	118, 165, 247, 367
MboII	GAAGA	5 cut(s)	515, 625, 709, 712, 715
MhlI	GDGCHC	2 cut(s)	191, 565
MlyI	GAGTC	2 cut(s)	204, 634
MmeI	TCCRAC	2 cut(s)	294, 479
MnlI	CCTC	7 cut(s)	95, 109, 140, 235, 316, 536, 598
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	3 cut(s)	360, 549, 761
MspR9I	CCNGG	3 cut(s)	172, 550, 761
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	4 cut(s)	272, 276, 346, 580
NciI	CCSGG	2 cut(s)	550, 761
NdeII	GATC	4 cut(s)	118, 165, 247, 367
NlaIII	CATG	2 cut(s)	502, 800
NlaIV	GGNNCC	3 cut(s)	190, 547, 759
NmeAIII	GCCGAG	1 cut(s)	685
PasI	CCCWGGG	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PfeI	GAWTC	2 cut(s)	419, 673
PfoI	TCCNGGA	1 cut(s)	759
PkrI	GCNGC	4 cut(s)	26, 265, 281, 781
PleI	GAGTC	2 cut(s)	203, 633
PpsI	GAGTC	2 cut(s)	203, 633
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	190, 547, 759
PspPI	GGNCC	3 cut(s)	546, 642, 757
RsaI	GTAC	2 cut(s)	401, 531
RsaNI	GTAC	2 cut(s)	400, 530
RseI	CAYNNNNRTG	1 cut(s)	732
SatI	GCNGC	4 cut(s)	25, 264, 280, 780
Sau3AI	GATC	4 cut(s)	118, 165, 247, 367
Sau96I	GGNCC	3 cut(s)	546, 642, 757
SchI	GAGTC	2 cut(s)	204, 634
ScrFI	CCNGG	3 cut(s)	172, 550, 761
SduI	GDGCHC	2 cut(s)	191, 565
SfaNI	GCATC	1 cut(s)	646
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	2 cut(s)	642, 757
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	5 cut(s)	111, 153, 372, 383, 579
StyD4I	CCNGG	3 cut(s)	170, 548, 759
StyI	CCWWGG	1 cut(s)	371
TaiI	ACGT	3 cut(s)	61, 136, 498
TaqI	TCGA	1 cut(s)	678
TaqII	GACCGA	1 cut(s)	659
TatI	WGTACW	2 cut(s)	399, 529
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	419, 673
TseI	GCWGC	3 cut(s)	24, 263, 779
TspDTI	ATGAA	2 cut(s)	17, 93
VneI	GTGCAC	1 cut(s)	561
VpaK11BI	GGWCC	2 cut(s)	642, 757
XbaI	TCTAGA	2 cut(s)	152, 382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	208
XmaJI	CCTAGG	1 cut(s)	371
XspI	CTAG	5 cut(s)	111, 153, 372, 383, 579
ZraI	GACGTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.