Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

21068347 .. 21069689

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28432.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAAAGAAAAGGAGTTGAAAGGCAGAATATTGCCTGATACACATCCGGAAACCATACGCGTTAGGGCAGTAGCCAATGACTTGATTGGGGCATTGAAAAGAAATCTTGAGCAAGAGGTGATGATGCCGGCATTGACGGACTTCAATAATGAACATAAGAAGGCAAATAAGGCAGTAGAAAGCAGCAAGGATAATGTGGTTATGGATGATATGTGGATCGAGAAGAGTAGAAAGCAGAAGGGTGAGCGGCGAGGCTCCGTATCGCATTTGAATGGTTTGGAGTGGGAGATTTTGGTGGTGGATGAGCCTATAGTCAATGCATATTGCTTGCCCGGCGGGAAGATTGTGGTCTTCAGAGGGTTGCTCAATCATTGTAAAAGTAATGCTGAATTAGCAACCATAATTGGTCATGAGCTCTATATGATACTGATAGGTTTGAGAAACAATTTTCAAGTTGGACATGCCATCGCTCGACACACTGCAGAGGCCCTCACAAAGGACATGTGGCTTGTCATATTTCTACTCGTTTTTCTTCTGTTTTCAGCAGATTTCCTGTTTGTAGATGGGCAAGACAATGCAAAATTACTGAAAGGTTTATGGAATTTAAGCAGCGTTGTATTTACACTTCCATTTTCTCGAAGGATGGAAATGGAAGCGGATTACATAGGGCTGTTGTTGCTTGCTTCAGCTGGATACGATCCCATGGTGGCTCCAGGTGTGTACAAGAAGTTGAGCGGGACTGCTGGTGGATCTGCAAAATGGGAAGATTATCTATCTACCCATCCTTCAGGGGAAAAGCGAGTTGAAAACCTGAGTCAAGCTAAGGTCATGGAAGAAGCACTCTCTATATATCGGGATGTAAAACAAGGGCGTGGGGTTAAAGGGTTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

298

Amino Acids

33.27

Weight (kDa)

7.77

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	77 - 273	3e-28	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	247, 735
AccII	CGCG	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	4 cut(s)	247, 336, 656, 735
AclWI	GGATC	3 cut(s)	224, 692, 757
AcsI	RAATTY	1 cut(s)	601
AcuI	CTGAAG	3 cut(s)	337, 669, 771
AfaI	GTAC	1 cut(s)	722
AfiI	CCNNNNNNNGG	1 cut(s)	496
AflIII	ACRYGT	2 cut(s)	58, 501
AgsI	TTSAA	6 cut(s)	19, 97, 145, 271, 452, 806
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	3 cut(s)	415, 689, 821
AluI	AGCT	3 cut(s)	415, 689, 821
Alw21I	GWGCWC	1 cut(s)	417
AlwI	GGATC	3 cut(s)	224, 692, 757
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	1 cut(s)	486
ApeKI	GCWGC	2 cut(s)	183, 609
ApoI	RAATTY	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	487
AsuC2I	CCSGG	1 cut(s)	333
AsuHPI	GGTGA	2 cut(s)	130, 254
BanII	GRGCYC	1 cut(s)	417
BarI	GAAGNNNNNNTAC	2 cut(s)	609, 641
BbsI	GAAGAC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	195, 621
BccI	CCATC	4 cut(s)	473, 557, 637, 789
BciT130I	CCWGG	1 cut(s)	714
BciVI	GTATCC	1 cut(s)	686
BcnI	CCSGG	1 cut(s)	333
BfmI	CTRYAG	2 cut(s)	309, 480
BfuI	GTATCC	1 cut(s)	686
BisI	GCNGC	3 cut(s)	184, 248, 610
BlsI	GCNGC	3 cut(s)	185, 249, 611
Bme1390I	CCNGG	2 cut(s)	333, 714
BmgT120I	GGNCC	1 cut(s)	487
BmiI	GGNNCC	2 cut(s)	256, 711
BmrFI	CCNGG	2 cut(s)	333, 714
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	343
BplI	GAGNNNNNCTC	2 cut(s)	348, 380
BpmI	CTGGAG	1 cut(s)	696
Bpu10I	CCTNAGC	1 cut(s)	822
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	702
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	496
Bse118I	RCCGGY	1 cut(s)	127
Bse8I	GATNNNNATC	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	702
BseGI	GGATG	6 cut(s)	43, 211, 307, 648, 781, 862
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	496
BseMII	CTCAG	1 cut(s)	803
BseXI	GCAGC	2 cut(s)	195, 621
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	488
BsiHKAI	GWGCWC	1 cut(s)	417
BsiSI	CCGG	3 cut(s)	47, 128, 333
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	496
BsmFI	GGGAC	1 cut(s)	751
BsnI	GGCC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	417
Bsp13I	TCCGGA	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	720
Bsp143I	GATC	3 cut(s)	216, 697, 749
Bsp19I	CCATGG	1 cut(s)	702
BspACI	CCGC	4 cut(s)	247, 336, 656, 735
BspANI	GGCC	1 cut(s)	488
BspCNI	CTCAG	1 cut(s)	804
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	256, 711
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	3 cut(s)	224, 692, 757
BsrBI	CCGCTC	2 cut(s)	247, 735
BsrFI	RCCGGY	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	720
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	702
BssMI	GATC	3 cut(s)	216, 697, 749
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	714
Bst6I	CTCTTC	1 cut(s)	218
BstAUI	TGTACA	1 cut(s)	720
BstC8I	GCNNGC	3 cut(s)	129, 329, 681
BstDEI	CTNAG	2 cut(s)	812, 822
BstDSI	CCRYGG	1 cut(s)	702
BstENI	CCTNNNNNAGG	1 cut(s)	494
BstF5I	GGATG	6 cut(s)	43, 211, 307, 648, 781, 862
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	3 cut(s)	219, 700, 752
BstMBI	GATC	3 cut(s)	216, 697, 749
BstMWI	GCNNNNNNNGC	4 cut(s)	170, 333, 392, 676
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	2 cut(s)	464, 505
BstSCI	CCNGG	2 cut(s)	331, 712
BstSFI	CTRYAG	2 cut(s)	309, 480
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	195, 621
BstV2I	GAAGAC	1 cut(s)	343
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BsuI	GTATCC	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	702
BtgZI	GCGATG	1 cut(s)	451
BtsCI	GGATG	6 cut(s)	43, 211, 307, 648, 781, 862
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	3 cut(s)	129, 329, 681
CciI	TCATGA	1 cut(s)	409
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	721
CviAII	CATG	5 cut(s)	410, 461, 502, 703, 829
CviQI	GTAC	1 cut(s)	721
DdeI	CTNAG	2 cut(s)	812, 822
DpnI	GATC	3 cut(s)	218, 699, 751
DpnII	GATC	3 cut(s)	216, 697, 749
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	702
Eco24I	GRGCYC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	415
Eco57I	CTGAAG	3 cut(s)	337, 669, 771
EcoICRI	GAGCTC	1 cut(s)	415
EcoNI	CCTNNNNNAGG	1 cut(s)	494
EcoO109I	RGGNCCY	1 cut(s)	487
EcoRII	CCWGG	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	702
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	5 cut(s)	413, 464, 505, 706, 832
FalI	AAGNNNNNCTT	1 cut(s)	873
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	5 cut(s)	409, 460, 501, 702, 828
FauI	CCCGC	2 cut(s)	329, 728
Fnu4HI	GCNGC	3 cut(s)	184, 248, 610
FokI	GGATG	6 cut(s)	30, 218, 314, 655, 768, 869
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	3 cut(s)	184, 248, 610
GluI	GCNGC	3 cut(s)	184, 248, 610
GsuI	CTGGAG	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	3 cut(s)	47, 128, 333
Hin1II	CATG	5 cut(s)	413, 464, 505, 706, 832
HinfI	GANTC	1 cut(s)	814
HpaII	CCGG	3 cut(s)	47, 128, 333
HphI	GGTGA	2 cut(s)	130, 254
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	6 cut(s)	47, 107, 220, 410, 636, 854
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	4 cut(s)	154, 232, 633, 795
HpyCH4V	TGCA	4 cut(s)	320, 482, 578, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	170, 333, 392, 676
HpyF3I	CTNAG	2 cut(s)	812, 822
Hsp92II	CATG	5 cut(s)	413, 464, 505, 706, 832
Kpn2I	TCCGGA	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	127
KroNI	GCCGGC	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	216, 697, 749
LmnI	GCTCC	2 cut(s)	260, 715
Lsp1109I	GCAGC	2 cut(s)	195, 621
LweI	GCATC	1 cut(s)	114
MalI	GATC	3 cut(s)	218, 699, 751
MbiI	CCGCTC	2 cut(s)	247, 735
MboI	GATC	3 cut(s)	216, 697, 749
MboII	GAAGA	6 cut(s)	235, 343, 352, 524, 776, 845
MflI	RGATCY	1 cut(s)	749
MhlI	GDGCHC	1 cut(s)	417
MluCI	AATT	5 cut(s)	389, 402, 445, 581, 601
MluI	ACGCGT	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	823
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	5 cut(s)	109, 245, 350, 478, 500
Mph1103I	ATGCAT	1 cut(s)	322
MroI	TCCGGA	1 cut(s)	46
MroNI	GCCGGC	1 cut(s)	127
MseI	TTAA	2 cut(s)	605, 879
MslI	CAYNNNNRTG	1 cut(s)	270
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	3 cut(s)	47, 128, 333
MspR9I	CCNGG	2 cut(s)	333, 714
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	4 cut(s)	170, 333, 392, 676
NaeI	GCCGGC	1 cut(s)	129
NciI	CCSGG	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	3 cut(s)	216, 697, 749
NgoMIV	GCCGGC	1 cut(s)	127
NlaIII	CATG	5 cut(s)	413, 464, 505, 706, 832
NlaIV	GGNNCC	2 cut(s)	256, 711
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	2 cut(s)	464, 505
PagI	TCATGA	1 cut(s)	409
PciI	ACATGT	1 cut(s)	501
PdiI	GCCGGC	1 cut(s)	129
PkrI	GCNGC	3 cut(s)	185, 249, 611
PleI	GAGTC	1 cut(s)	822
PpsI	GAGTC	1 cut(s)	822
PscI	ACATGT	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	256, 711
PspPI	GGNCC	1 cut(s)	487
PstI	CTGCAG	1 cut(s)	484
PsuI	RGATCY	1 cut(s)	749
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	722
RsaNI	GTAC	1 cut(s)	721
RseI	CAYNNNNRTG	1 cut(s)	270
SacI	GAGCTC	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	605, 879
SatI	GCNGC	3 cut(s)	184, 248, 610
Sau3AI	GATC	3 cut(s)	216, 697, 749
Sau96I	GGNCC	1 cut(s)	487
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	2 cut(s)	333, 714
SduI	GDGCHC	1 cut(s)	417
SetI	ASST	9 cut(s)	120, 417, 436, 595, 691, 718, 813, 823, 828
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	2 cut(s)	309, 480
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	5 cut(s)	389, 402, 445, 581, 601
SsiI	CCGC	4 cut(s)	247, 336, 656, 735
SspI	AATATT	1 cut(s)	30
SstI	GAGCTC	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	331, 712
StyI	CCWWGG	1 cut(s)	702
TaqI	TCGA	3 cut(s)	219, 472, 637
TasI	AATT	5 cut(s)	389, 402, 445, 581, 601
TatI	WGTACW	1 cut(s)	720
TauI	GCSGC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	605, 879
Tru9I	TTAA	2 cut(s)	605, 879
TscAI	CASTG	1 cut(s)	484
TseI	GCWGC	2 cut(s)	183, 609
TspDTI	ATGAA	2 cut(s)	17, 165
TspGWI	ACGGA	2 cut(s)	152, 247
TspRI	CASTG	1 cut(s)	484
XagI	CCTNNNNNAGG	1 cut(s)	494
XapI	RAATTY	1 cut(s)	601
XceI	RCATGY	2 cut(s)	464, 505
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.