Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

25449637 .. 25453061

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG215800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCTTGGGTTTGGGAGGCCAACCAGGGAAATCCGGTTGGCGAAAATGCCACCTTCTCGTTGGGGACCGATTGTAACCTCGTCTTGGCCAAAGCTGAAGCCACTCCCCGGTTGGCGAAAATGCCACCTTCTCGTGGGGGACTGATGGTAACCTTGTCCTGGTCAAAGCCAATGGCCGAGTGGCTTGGTCTTTGGAAGCAAATCAAAGCCGCTCTAGCAGGAACTCATAGCTCTCTCAGCTCCAGCGTTTCTATCATCCCAAGTCCCACTATCCAGCTCCTCTCGACTTGCAGTTTGTATGAAGTCAGGCCTTCTCAAAATGATCTCGCGGAGCATATGCCTTTAATTAGGGAGGCTCTTAAATGGGAGGATTCTTTGGCAAAGTTCAAGGTGTGGTTTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

135

Amino Acids

14.88

Weight (kDa)

7.79

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	212
AccII	CGCG	1 cut(s)	329
AciI	CCGC	2 cut(s)	210, 329
AcoI	YGGCCR	2 cut(s)	87, 174
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	4 cut(s)	85, 108, 134, 159
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	24, 158
AluBI	AGCT	4 cut(s)	95, 231, 240, 277
AluI	AGCT	4 cut(s)	95, 231, 240, 277
AoxI	GGCC	4 cut(s)	18, 87, 174, 308
ArsI	GACNNNNNNTTYG	2 cut(s)	277, 309
AspS9I	GGNCC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	89
BauI	CACGAG	1 cut(s)	132
BccI	CCATC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	26, 160
BcnI	CCSGG	1 cut(s)	109
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	26, 109, 160
Bme18I	GGWCC	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	66
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	3 cut(s)	26, 109, 160
BpmI	CTGGAG	1 cut(s)	226
BpuMI	CCSGG	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	5, 25, 107
BsaWI	WCCGGW	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 108, 134, 159
BseBI	CCWGG	2 cut(s)	26, 160
BseDI	CCNNGG	3 cut(s)	5, 25, 107
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	4 cut(s)	85, 108, 134, 159
BseMII	CTCAG	1 cut(s)	250
BseRI	GAGGAG	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	4 cut(s)	20, 89, 176, 310
BsiSI	CCGG	2 cut(s)	35, 109
BslFI	GGGAC	3 cut(s)	79, 153, 249
BslI	CCNNNNNNNGG	4 cut(s)	85, 108, 134, 159
BsmFI	GGGAC	3 cut(s)	79, 153, 249
BsnI	GGCC	4 cut(s)	20, 89, 176, 310
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	2 cut(s)	210, 329
BspANI	GGCC	4 cut(s)	20, 89, 176, 310
BspCNI	CTCAG	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	67
BsrBI	CCGCTC	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	5, 25, 107
BssMI	GATC	1 cut(s)	322
BssSI	CACGAG	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	26, 160
BstDEI	CTNAG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 237
BstNI	CCWGG	2 cut(s)	26, 160
BstPI	GGTNACC	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	24, 107, 158
BstUI	CGCG	1 cut(s)	329
BsuRI	GGCC	4 cut(s)	20, 89, 176, 310
BtsCI	GGATG	1 cut(s)	255
Cfr13I	GGNCC	1 cut(s)	66
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
EaeI	YGGCCR	2 cut(s)	87, 174
Eco130I	CCWWGG	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	117
Eco91I	GGTNACC	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	24, 158
EcoT14I	CCWWGG	1 cut(s)	5
ErhI	CCWWGG	1 cut(s)	5
FaiI	YATR	4 cut(s)	228, 300, 336, 338
FaqI	GGGAC	3 cut(s)	79, 153, 249
FauNDI	CATATG	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	210
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	4 cut(s)	20, 89, 176, 310
HapII	CCGG	2 cut(s)	35, 109
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	2 cut(s)	35, 109
Hpy188III	TCNNGA	1 cut(s)	283
HpyAV	CCTTC	3 cut(s)	64, 138, 321
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 237
HpyF3I	CTNAG	1 cut(s)	236
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	3 cut(s)	245, 282, 331
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	2 cut(s)	74, 148
MalI	GATC	1 cut(s)	324
MbiI	CCGCTC	1 cut(s)	212
MboI	GATC	1 cut(s)	322
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	1 cut(s)	345
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	5 cut(s)	10, 89, 290, 346, 361
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	344, 360
Msp20I	TGGCCA	1 cut(s)	89
MspI	CCGG	2 cut(s)	35, 109
MspR9I	CCNGG	3 cut(s)	26, 109, 160
MvaI	CCWGG	2 cut(s)	26, 160
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	215, 237
NciI	CCSGG	1 cut(s)	109
NdeI	CATATG	1 cut(s)	336
NdeII	GATC	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	67
NmeAIII	GCCGAG	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	24, 158
PspEI	GGTNACC	1 cut(s)	148
PspGI	CCWGG	2 cut(s)	24, 158
PspN4I	GGNNCC	1 cut(s)	67
PspPI	GGNCC	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	344, 360
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	26, 109, 160
SetI	ASST	9 cut(s)	56, 81, 97, 130, 155, 233, 242, 279, 393
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	1 cut(s)	345
SseBI	AGGCCT	1 cut(s)	310
SsiI	CCGC	2 cut(s)	210, 329
SspMI	CTAG	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	310
StyD4I	CCNGG	3 cut(s)	24, 107, 158
StyI	CCWWGG	1 cut(s)	5
TaqI	TCGA	1 cut(s)	284
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	1 cut(s)	345
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	344, 360
Tru9I	TTAA	2 cut(s)	344, 360
TspDTI	ATGAA	1 cut(s)	315
VpaK11BI	GGWCC	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	3 cut(s)	58, 109, 177
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.