RchiOBHm_Chr1g0342951

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000604
Physical Location & Seq
Forward (+)
34749895 .. 34752969
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56954

Sequence Viewer

Length: 261 bp
ATGCTGCATGGGATGTTTGCATACCAATTTCAAGTGAGAATGCTCTTTTATGTCATAATCGCGTCGGGTACAACAAGATATTGGATAATTCAAGTGCTAATTGTAGCTTGTCGTTCAAATGTTTCTAGGCCAGCCTGTGTAGGTTTTGGGGTTTTATTTTGTGAATTATGTAGAATCATGAATTTGGAAAGAAAATTAATGGAAATCCCCAATTTTTGGATGATGAGAAATGTATATCTTTTCCCACCAGCAGCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

10.14

Weight (kDa)

9.69

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 216
AccII CGCG 1 cut(s) 62
AcsI RAATTY 1 cut(s) 181
AfaI GTAC 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 3 cut(s) 32, 92, 117
AluBI AGCT 2 cut(s) 107, 254
AluI AGCT 2 cut(s) 107, 254
AoxI GGCC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 4, 251
ApoI RAATTY 1 cut(s) 181
AseI ATTAAT 1 cut(s) 197
BfaI CTAG 2 cut(s) 126, 255
BisI GCNGC 2 cut(s) 5, 252
BlsI GCNGC 2 cut(s) 6, 253
Bsc4I CCNNNNNNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 18, 225
BseLI CCNNNNNNNGG 1 cut(s) 216
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 1 cut(s) 130
BslI CCNNNNNNNGG 1 cut(s) 216
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 1 cut(s) 130
BspANI GGCC 1 cut(s) 130
BspFNI CGCG 1 cut(s) 62
BspHI TCATGA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 132
BstF5I GGATG 2 cut(s) 18, 225
BstFNI CGCG 1 cut(s) 62
BstUI CGCG 1 cut(s) 62
BsuRI GGCC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 18, 225
Cac8I GCNNGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 177
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 69
CviAII CATG 2 cut(s) 8, 178
CviJI RGCY 4 cut(s) 107, 130, 134, 254
CviKI_1 RGCY 4 cut(s) 107, 130, 134, 254
CviQI GTAC 1 cut(s) 69
FaeI CATG 2 cut(s) 11, 181
FaiI YATR 7 cut(s) 9, 22, 51, 56, 169, 179, 235
FatI CATG 2 cut(s) 7, 177
Fnu4HI GCNGC 2 cut(s) 5, 252
FokI GGATG 2 cut(s) 25, 232
Fsp4HI GCNGC 2 cut(s) 5, 252
FspBI CTAG 2 cut(s) 126, 255
GluI GCNGC 2 cut(s) 5, 252
HaeIII GGCC 1 cut(s) 130
HgaI GACGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 11, 181
HinfI GANTC 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 178
Hpy99I CGWCG 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 7, 20
Hsp92II CATG 2 cut(s) 11, 181
LpnPI CCDG 2 cut(s) 144, 148
MaeI CTAG 2 cut(s) 126, 255
MluCI AATT 7 cut(s) 26, 87, 99, 164, 181, 194, 211
MseI TTAA 1 cut(s) 197
Mva1269I GAATGC 1 cut(s) 45
MvnI CGCG 1 cut(s) 62
NlaIII CATG 2 cut(s) 11, 181
PagI TCATGA 1 cut(s) 177
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 174
PflMI CCANNNNNTGG 1 cut(s) 216
PkrI GCNGC 2 cut(s) 6, 253
PshBI ATTAAT 1 cut(s) 197
RsaI GTAC 1 cut(s) 70
RsaNI GTAC 1 cut(s) 69
SaqAI TTAA 1 cut(s) 197
SatI GCNGC 2 cut(s) 5, 252
SetI ASST 3 cut(s) 109, 145, 256
Sse9I AATT 7 cut(s) 26, 87, 99, 164, 181, 194, 211
SspMI CTAG 2 cut(s) 126, 255
TasI AATT 7 cut(s) 26, 87, 99, 164, 181, 194, 211
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 197
Tru9I TTAA 1 cut(s) 197
TseI GCWGC 2 cut(s) 4, 251
TspDTI ATGAA 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 216
VspI ATTAAT 1 cut(s) 197
XapI RAATTY 1 cut(s) 181
XspI CTAG 2 cut(s) 126, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.