Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

1360733 .. 1361777

Gene Structure 1045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1015000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACAAGAACAACACAGTACAAAAGCCCCTTTCTTGATAGCACTAAGAGATATTACTATGTCGACCGGATCCGGGTTCACCACTTCAAGCCGAGAGGCCCCCGGAAGTGGTTTGAGAATCCCAGGAACGTTTTCATTGTGGGTCTTACGATTCCGTACACGAAGCGAACCCATTTTATAATTTTGTCGAAAGCCTTGGAGAAGAGGTTGGGGGAGACCCAATTCCAGAAAATGAAAGAGAGTTTCAAGGGGGACATTTTGCCCGCCATACAACCGGATAGCGTGCGGATTCGGTTGATTGCCAAGGATATAATTGAGGTTTTGCAGAGAGGGTTGAGCCATGAGGTGACCTGGACTGACGTGGACTATGCGTCCGGTAAAGTGGAGCTAGTGCATGAAGGTGGTGGGAAGGATACTTTGATGGCACTGCAGGACGCTCCGGAGGAGGGGAATTGGTCCCGTGAGGATGAGATTCTTGATGATCAATGGATTGAGAAGAGTAGGAGGACGAGTACGGAGAGAGGTTTGAAAGCTGCCACTTCACATTTGGATCAATTGAATTGGGAGGTTTTGGTAGTGGATCGGCCTGTTATCAATGCATTTTGCTTGCCGGGTGGGAAGATTGTTGTCTTCACGGGATTGCTCAAGCATTTTAGAAGTGATGCCGAGATAGCGACGATCATTGGTCATGAGTTTTTGTATACTATTACAAAGAACCTGTGGTTTGCAACTCTGCAACTGGTACTTTATCAATTCGTTACGCCTGATGTTTTCAACACAATGTCCAATCTTTTCTTGAGGCTTCCTTTCTCCCGAAGGTACATTACAGTACTTTATAGTTTAGTTTCTAGTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

287

Amino Acids

33.23

Weight (kDa)

9.26

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	171 - 232	3.1e-13	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AccI	GTMKAC	2 cut(s)	63, 701
AccIII	TCCGGA	1 cut(s)	439
AciI	CCGC	2 cut(s)	264, 286
AclI	AACGTT	1 cut(s)	129
AclWI	GGATC	4 cut(s)	64, 77, 558, 588
AfaI	GTAC	6 cut(s)	20, 158, 514, 744, 821, 831
AfiI	CCNNNNNNNGG	3 cut(s)	73, 108, 446
AgsI	TTSAA	5 cut(s)	88, 247, 529, 559, 775
AhdI	GACNNNNNGTC	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	2 cut(s)	122, 350
AluBI	AGCT	2 cut(s)	388, 533
AluI	AGCT	2 cut(s)	388, 533
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	4 cut(s)	64, 77, 558, 588
Aor13HI	TCCGGA	1 cut(s)	439
AoxI	GGCC	2 cut(s)	97, 584
ApeKI	GCWGC	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	98, 456
AsuC2I	CCSGG	3 cut(s)	74, 103, 612
AsuHPI	GGTGA	2 cut(s)	71, 358
AvaII	GGWCC	1 cut(s)	456
BamHI	GGATCC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	2 cut(s)	808, 840
BbsI	GAAGAC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	520
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	2 cut(s)	124, 352
BciVI	GTATCC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	3 cut(s)	74, 103, 612
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	389, 849
BfmI	CTRYAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	1 cut(s)	534
BlsI	GCNGC	1 cut(s)	535
BmcAI	AGTACT	1 cut(s)	831
Bme1390I	CCNGG	5 cut(s)	74, 103, 124, 352, 612
Bme18I	GGWCC	1 cut(s)	456
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	98, 456
BmiI	GGNNCC	3 cut(s)	71, 100, 458
BmrFI	CCNGG	5 cut(s)	74, 103, 124, 352, 612
BmsI	GCATC	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	622
BpuEI	CTTGAG	2 cut(s)	629, 817
BpuMI	CCSGG	3 cut(s)	74, 103, 612
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	4 cut(s)	101, 122, 195, 303
BsaWI	WCCGGW	4 cut(s)	66, 274, 374, 439
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 496, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 108, 446
Bse1I	ACTGG	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	439
BseBI	CCWGG	2 cut(s)	124, 352
BseDI	CCNNGG	4 cut(s)	101, 122, 195, 303
BseGI	GGATG	1 cut(s)	472
BseLI	CCNNNNNNNGG	3 cut(s)	73, 108, 446
BseNI	ACTGG	1 cut(s)	744
BseRI	GAGGAG	1 cut(s)	458
BseXI	GCAGC	1 cut(s)	520
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	99, 586
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	7 cut(s)	67, 73, 103, 275, 375, 440, 611
BslFI	GGGAC	2 cut(s)	266, 442
BslI	CCNNNNNNNGG	3 cut(s)	73, 108, 446
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	266, 442
BsnI	GGCC	2 cut(s)	99, 586
Bso31I	GGTCTC	1 cut(s)	209
Bsp13I	TCCGGA	1 cut(s)	439
Bsp143I	GATC	5 cut(s)	69, 481, 550, 580, 678
BspACI	CCGC	2 cut(s)	264, 286
BspANI	GGCC	2 cut(s)	99, 586
BspEI	TCCGGA	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	3 cut(s)	71, 100, 458
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	4 cut(s)	64, 77, 558, 588
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	744
BssECI	CCNNGG	4 cut(s)	101, 122, 195, 303
BssMI	GATC	5 cut(s)	69, 481, 550, 580, 678
BssNAI	GTATAC	1 cut(s)	702
BssT1I	CCWWGG	2 cut(s)	195, 303
Bst1107I	GTATAC	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	124, 352
Bst4CI	ACNGT	2 cut(s)	18, 829
Bst6I	CTCTTC	2 cut(s)	197, 491
BstC8I	GCNNGC	3 cut(s)	264, 284, 608
BstDEI	CTNAG	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	472
BstKTI	GATC	5 cut(s)	72, 484, 553, 583, 681
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	69, 481, 550, 580, 678
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	671
BstNI	CCWGG	2 cut(s)	124, 352
BstPI	GGTNACC	1 cut(s)	346
BstSCI	CCNGG	5 cut(s)	72, 101, 122, 350, 610
BstSFI	CTRYAG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	520
BstV2I	GAAGAC	1 cut(s)	622
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BstZ17I	GTATAC	1 cut(s)	702
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	2 cut(s)	99, 586
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	425
BtsIMutI	CAGTG	1 cut(s)	425
Cac8I	GCNNGC	3 cut(s)	264, 284, 608
CciI	TCATGA	1 cut(s)	688
Cfr13I	GGNCC	2 cut(s)	98, 456
CseI	GACGC	2 cut(s)	360, 443
Csp6I	GTAC	6 cut(s)	19, 157, 513, 743, 820, 830
CviAII	CATG	3 cut(s)	341, 395, 689
CviJI	RGCY	9 cut(s)	27, 91, 99, 194, 339, 388, 533, 586, 802
CviKI_1	RGCY	9 cut(s)	27, 91, 99, 194, 339, 388, 533, 586, 802
CviQI	GTAC	6 cut(s)	19, 157, 513, 743, 820, 830
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	5 cut(s)	71, 483, 552, 582, 680
DpnII	GATC	5 cut(s)	69, 481, 550, 580, 678
DriI	GACNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	197, 491
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	2 cut(s)	197, 491
Eco130I	CCWWGG	2 cut(s)	195, 303
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	456
Eco91I	GGTNACC	1 cut(s)	346
EcoO109I	RGGNCCY	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	346
EcoRII	CCWGG	2 cut(s)	122, 350
EcoT14I	CCWWGG	2 cut(s)	195, 303
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	2 cut(s)	195, 303
FaeI	CATG	3 cut(s)	344, 398, 692
FaqI	GGGAC	2 cut(s)	266, 442
FatI	CATG	3 cut(s)	340, 394, 688
FauI	CCCGC	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	2 cut(s)	63, 701
Fnu4HI	GCNGC	1 cut(s)	534
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	534
FspBI	CTAG	2 cut(s)	389, 849
GluI	GCNGC	1 cut(s)	534
HaeIII	GGCC	2 cut(s)	99, 586
HapII	CCGG	7 cut(s)	67, 73, 103, 275, 375, 440, 611
HgaI	GACGC	2 cut(s)	360, 443
Hin1II	CATG	3 cut(s)	344, 398, 692
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	4 cut(s)	118, 151, 289, 472
HpaII	CCGG	7 cut(s)	67, 73, 103, 275, 375, 440, 611
HphI	GGTGA	2 cut(s)	71, 358
Hpy166II	GTNNAC	5 cut(s)	64, 79, 159, 364, 702
Hpy188III	TCNNGA	7 cut(s)	35, 226, 440, 476, 689, 796, 813
Hpy8I	GTNNAC	5 cut(s)	64, 79, 159, 364, 702
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	3 cut(s)	392, 403, 810
HpyCH4III	ACNGT	2 cut(s)	18, 829
HpyCH4IV	ACGT	2 cut(s)	129, 360
HpyCH4V	TGCA	6 cut(s)	325, 394, 430, 599, 728, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	671
HpyF3I	CTNAG	1 cut(s)	45
HpySE526I	ACGT	2 cut(s)	129, 360
Hsp92II	CATG	3 cut(s)	344, 398, 692
Kpn2I	TCCGGA	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	69, 481, 550, 580, 678
LmnI	GCTCC	2 cut(s)	385, 442
Lsp1109I	GCAGC	1 cut(s)	520
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	389, 849
MaeII	ACGT	2 cut(s)	129, 360
MaeIII	GTNAC	2 cut(s)	346, 757
MalI	GATC	5 cut(s)	71, 483, 552, 582, 680
MboI	GATC	5 cut(s)	69, 481, 550, 580, 678
MboII	GAAGA	4 cut(s)	214, 508, 622, 631
MfeI	CAATTG	1 cut(s)	554
MflI	RGATCY	1 cut(s)	69
MluCI	AATT	7 cut(s)	180, 221, 312, 451, 554, 559, 752
Mph1103I	ATGCAT	1 cut(s)	601
MroI	TCCGGA	1 cut(s)	439
MroXI	GAANNNNTTC	1 cut(s)	131
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	7 cut(s)	67, 73, 103, 275, 375, 440, 611
MspR9I	CCNGG	5 cut(s)	74, 103, 124, 352, 612
MunI	CAATTG	1 cut(s)	554
MvaI	CCWGG	2 cut(s)	124, 352
MwoI	GCNNNNNNNGC	1 cut(s)	671
NciI	CCSGG	3 cut(s)	74, 103, 612
NdeII	GATC	5 cut(s)	69, 481, 550, 580, 678
NlaIII	CATG	3 cut(s)	344, 398, 692
NlaIV	GGNNCC	3 cut(s)	71, 100, 458
NmeAIII	GCCGAG	2 cut(s)	117, 691
NmuCI	GTSAC	1 cut(s)	346
NsiI	ATGCAT	1 cut(s)	601
PagI	TCATGA	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	118, 151, 289, 472
PkrI	GCNGC	1 cut(s)	535
PsiI	TTATAA	1 cut(s)	179
Psp1406I	AACGTT	1 cut(s)	129
Psp6I	CCWGG	2 cut(s)	122, 350
PspEI	GGTNACC	1 cut(s)	346
PspGI	CCWGG	2 cut(s)	122, 350
PspN4I	GGNNCC	3 cut(s)	71, 100, 458
PspPI	GGNCC	2 cut(s)	98, 456
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	6 cut(s)	20, 158, 514, 744, 821, 831
RsaNI	GTAC	6 cut(s)	19, 157, 513, 743, 820, 830
RseI	CAYNNNNRTG	1 cut(s)	399
SalI	GTCGAC	1 cut(s)	62
SatI	GCNGC	1 cut(s)	534
Sau3AI	GATC	5 cut(s)	69, 481, 550, 580, 678
Sau96I	GGNCC	2 cut(s)	98, 456
ScaI	AGTACT	1 cut(s)	831
ScrFI	CCNGG	5 cut(s)	74, 103, 124, 352, 612
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	1 cut(s)	456
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	2 cut(s)	644, 796
SmoI	CTYRAG	2 cut(s)	644, 796
Sse9I	AATT	7 cut(s)	180, 221, 312, 451, 554, 559, 752
SsiI	CCGC	2 cut(s)	264, 286
SspMI	CTAG	2 cut(s)	389, 849
StyD4I	CCNGG	5 cut(s)	72, 101, 122, 350, 610
StyI	CCWWGG	2 cut(s)	195, 303
TaaI	ACNGT	2 cut(s)	18, 829
TaiI	ACGT	2 cut(s)	132, 363
TaqI	TCGA	2 cut(s)	63, 188
TasI	AATT	7 cut(s)	180, 221, 312, 451, 554, 559, 752
TatI	WGTACW	2 cut(s)	18, 829
TfiI	GAWTC	4 cut(s)	118, 151, 289, 472
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	533
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	3 cut(s)	124, 248, 411
TspGWI	ACGGA	2 cut(s)	144, 530
TspRI	CASTG	1 cut(s)	432
VpaK11BI	GGWCC	1 cut(s)	456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmiI	GTMKAC	2 cut(s)	63, 701
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	2 cut(s)	389, 849
ZrmI	AGTACT	1 cut(s)	831
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.