RchiOBHm_Chr7g0214411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000604
Physical Location & Seq
Reverse (-)
31653035 .. 31653379
345 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19183

Sequence Viewer

Length: 225 bp
ATGAGAACTGATATAGTTGGTTGCTATTATGTTTATGGGCTAGCCTTTGTAGGTTTTGGGGTTTTGGTTTGTGAATTATGTAGAATCATGAATGAAGATGAGAAAATGAATGGAAAGCCCCAATTTTTGGATGATATATATGAAAAATGTATTTCTAGATCTTTAATTTCCAACCAGCAGCAGCTAGATGATTACTTGCACATCATTCTTATATATATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.66

Weight (kDa)

4.6

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 178, 181
AsuNHI GCTAGC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 190, 193
BfaI CTAG 3 cut(s) 41, 156, 185
BglII AGATCT 1 cut(s) 158
BisI GCNGC 2 cut(s) 179, 182
BlsI GCNGC 2 cut(s) 180, 183
BmtI GCTAGC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 127
BseXI GCAGC 2 cut(s) 190, 193
BslI CCNNNNNNNGG 1 cut(s) 127
Bsp143I GATC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 87
BspOI GCTAGC 1 cut(s) 44
BssMI GATC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 190, 193
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 42
CciI TCATGA 1 cut(s) 87
CviAII CATG 1 cut(s) 88
CviJI RGCY 4 cut(s) 40, 44, 118, 184
CviKI_1 RGCY 4 cut(s) 40, 44, 118, 184
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
FaeI CATG 1 cut(s) 91
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 179, 182
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 179, 182
FspBI CTAG 3 cut(s) 41, 156, 185
GluI GCNGC 2 cut(s) 179, 182
Hin1II CATG 1 cut(s) 91
HinfI GANTC 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 88, 156
HpyCH4V TGCA 1 cut(s) 199
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 1 cut(s) 158
LpnPI CCDG 1 cut(s) 188
Lsp1109I GCAGC 2 cut(s) 190, 193
MaeI CTAG 3 cut(s) 41, 156, 185
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 107
MflI RGATCY 1 cut(s) 158
MluCI AATT 3 cut(s) 74, 122, 165
MmeI TCCRAC 1 cut(s) 195
MseI TTAA 1 cut(s) 164
NdeII GATC 1 cut(s) 158
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 1 cut(s) 91
PagI TCATGA 1 cut(s) 87
PfeI GAWTC 1 cut(s) 84
PflMI CCANNNNNTGG 1 cut(s) 127
PkrI GCNGC 2 cut(s) 180, 183
PsuI RGATCY 1 cut(s) 158
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 179, 182
Sau3AI GATC 1 cut(s) 158
SetI ASST 2 cut(s) 55, 186
SgeI CNNG 6 cut(s) 53, 100, 168, 187, 197, 208
Sse9I AATT 3 cut(s) 74, 122, 165
SspMI CTAG 3 cut(s) 41, 156, 185
TasI AATT 3 cut(s) 74, 122, 165
TfiI GAWTC 1 cut(s) 84
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 2 cut(s) 178, 181
TspDTI ATGAA 4 cut(s) 104, 108, 122, 156
Van91I CCANNNNNTGG 1 cut(s) 127
XbaI TCTAGA 1 cut(s) 155
XspI CTAG 3 cut(s) 41, 156, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.