Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

62794515 .. 62795885

Gene Structure 1371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG401400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATGAAAATAGAGGGAACGATAGGCAGAACATTGCCTGATGGAGACTTGCAAACTAGGCGTGTTAGGCGCATTGGCAATGAAATAACTCAGGGGTTGATGAGAGGCATAACTAGGGAGGATCAAGAGAAGGGACGTCGGTGGTGGCGAGGCTCTAGAGTCGCCACTTCGCATTTGGATTTTTTGAAGTGGGAGTTCTATGTAGTGGACCAACCTGATATTATCAATGCATTTTGCTTGTTCGGCGGCAAGATTTTGGTCTACACAGGGTTGTTTAGGTATTTTATAAGTGATGAGGAGATAGCTGCCATACTTTGTCACGAGGTTGGGCATGCTGTGGCTCGACATTATGCAGAGGCCATTACAAAAGACTTGTGGCTTCTAATCCCACGACTAGTTTTCAACTTCTTTCAATGTTTTAGCGGTGCGGTTGCTGCGCATGCATACACATTCGACGGATTGTGCGACCTTTTATTCACTCTTCCTTTTGAACGAAGGAGAGAACTGGAGGCGGATTACATTGGGCTGTTGTTGCTTGCTTCGGCCGGGTATGATCCTAGGGTTGCTCTAGATGTGTGCCAGAAGTTCGATAAGCTTGCTGGTGGATCTCCGAACCAGAAAGATTATCTTTCTACCCATCCAACCGGGAAAAAGAGAGCTGAAAAGCTGGCTCAATCTCGCGTCATGGAAGAAGCACTCTCTATATACCGGGAAGTAGAAGCTGGACGAGGGGCCGGGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

247

Amino Acids

28.07

Weight (kDa)

7.66

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	56 - 224	1.1e-29	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	287
AatII	GACGTC	1 cut(s)	139
Acc16I	TGCGCA	1 cut(s)	438
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	1 cut(s)	681
AciI	CCGC	4 cut(s)	246, 423, 428, 512
AclWI	GGATC	3 cut(s)	129, 548, 613
AcoI	YGGCCR	1 cut(s)	543
AcyI	GRCGYC	1 cut(s)	136
AgsI	TTSAA	4 cut(s)	187, 403, 413, 491
AhlI	ACTAGT	1 cut(s)	394
AluBI	AGCT	5 cut(s)	305, 595, 659, 667, 722
AluI	AGCT	5 cut(s)	305, 595, 659, 667, 722
Alw26I	GTCTC	1 cut(s)	39
AlwI	GGATC	3 cut(s)	129, 548, 613
AoxI	GGCC	3 cut(s)	357, 543, 732
ApeKI	GCWGC	2 cut(s)	305, 434
AspA2I	CCTAGG	1 cut(s)	557
AspLEI	GCGC	2 cut(s)	72, 439
AspS9I	GGNCC	2 cut(s)	208, 732
AsuC2I	CCSGG	4 cut(s)	547, 646, 710, 736
AvaII	GGWCC	1 cut(s)	208
AvrII	CCTAGG	1 cut(s)	557
BauI	CACGAG	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	292, 421
BccI	CCATC	2 cut(s)	35, 645
BcgI	CGANNNNNNTGC	2 cut(s)	578, 612
BcnI	CCSGG	4 cut(s)	547, 646, 710, 736
BcoDI	GTCTC	1 cut(s)	39
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	6 cut(s)	57, 114, 156, 395, 558, 569
BisI	GCNGC	3 cut(s)	247, 306, 435
BlnI	CCTAGG	1 cut(s)	557
BlsI	GCNGC	3 cut(s)	248, 307, 436
Bme1390I	CCNGG	4 cut(s)	547, 646, 710, 736
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	208, 732
BmiI	GGNNCC	1 cut(s)	733
BmrFI	CCNGG	4 cut(s)	547, 646, 710, 736
BpmI	CTGGAG	1 cut(s)	527
BpuMI	CCSGG	4 cut(s)	547, 646, 710, 736
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	510
Bse3DI	GCAATG	2 cut(s)	32, 85
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	1 cut(s)	637
BseMI	GCAATG	2 cut(s)	32, 85
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	1 cut(s)	510
BseRI	GAGGAG	1 cut(s)	311
BseX3I	CGGCCG	1 cut(s)	543
BseXI	GCAGC	2 cut(s)	292, 421
Bsh1236I	CGCG	1 cut(s)	681
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	3 cut(s)	359, 545, 734
BsiEI	CGRYCG	1 cut(s)	546
BsiSI	CCGG	4 cut(s)	546, 645, 709, 735
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	359, 545, 734
Bsp143I	GATC	3 cut(s)	121, 553, 605
BspACI	CCGC	4 cut(s)	246, 423, 428, 512
BspANI	GGCC	3 cut(s)	359, 545, 734
BspCNI	CTCAG	1 cut(s)	103
BspFNI	CGCG	1 cut(s)	681
BspLI	GGNNCC	1 cut(s)	733
BspPI	GGATC	3 cut(s)	129, 548, 613
BsrDI	GCAATG	2 cut(s)	32, 85
BsrI	ACTGG	1 cut(s)	510
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	3 cut(s)	121, 553, 605
BssNI	GRCGYC	1 cut(s)	136
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	557
Bst2BI	CACGAG	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	1 cut(s)	136
BstC8I	GCNNGC	5 cut(s)	333, 441, 537, 597, 669
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	72, 439
BstKTI	GATC	3 cut(s)	124, 556, 608
BstMAI	GTCTC	1 cut(s)	39
BstMBI	GATC	3 cut(s)	121, 553, 605
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 67, 243, 434, 440, 532
BstNSI	RCATGY	2 cut(s)	335, 443
BstSCI	CCNGG	4 cut(s)	545, 644, 708, 734
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	2 cut(s)	292, 421
BstX2I	RGATCY	1 cut(s)	605
BstYI	RGATCY	1 cut(s)	605
BstZI	CGGCCG	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	359, 545, 734
BtsCI	GGATG	1 cut(s)	637
Cac8I	GCNNGC	5 cut(s)	333, 441, 537, 597, 669
CfoI	GCGC	2 cut(s)	72, 439
Cfr13I	GGNCC	2 cut(s)	208, 732
CseI	GACGC	1 cut(s)	670
CviAII	CATG	3 cut(s)	332, 440, 685
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	3 cut(s)	123, 555, 607
DpnII	GATC	3 cut(s)	121, 553, 605
EaeI	YGGCCR	1 cut(s)	543
EagI	CGGCCG	1 cut(s)	543
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	527
EclXI	CGGCCG	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	208
Eco52I	CGGCCG	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	557
EcoT22I	ATGCAT	2 cut(s)	232, 445
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	3 cut(s)	335, 443, 688
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	3 cut(s)	331, 439, 684
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	247, 306, 435
FokI	GGATG	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	247, 306, 435
FspBI	CTAG	6 cut(s)	57, 114, 156, 395, 558, 569
FspI	TGCGCA	1 cut(s)	438
GlaI	GCGC	2 cut(s)	71, 438
GluI	GCNGC	3 cut(s)	247, 306, 435
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	3 cut(s)	359, 545, 734
HapII	CCGG	4 cut(s)	546, 645, 709, 735
HgaI	GACGC	1 cut(s)	670
HhaI	GCGC	2 cut(s)	72, 439
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	3 cut(s)	335, 443, 688
Hin6I	GCGC	2 cut(s)	70, 437
HinP1I	GCGC	2 cut(s)	70, 437
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	1 cut(s)	159
HpaII	CCGG	4 cut(s)	546, 645, 709, 735
Hpy166II	GTNNAC	2 cut(s)	208, 262
Hpy188I	TCNGA	1 cut(s)	612
Hpy188III	TCNNGA	4 cut(s)	125, 156, 320, 569
Hpy8I	GTNNAC	2 cut(s)	208, 262
Hpy99I	CGWCG	2 cut(s)	141, 458
HpyAV	CCTTC	2 cut(s)	124, 489
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	4 cut(s)	52, 230, 353, 443
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 67, 243, 434, 440, 532
HpyF3I	CTNAG	1 cut(s)	90
HpySE526I	ACGT	1 cut(s)	136
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	3 cut(s)	335, 443, 688
HspAI	GCGC	2 cut(s)	70, 437
Kzo9I	GATC	3 cut(s)	121, 553, 605
Lsp1109I	GCAGC	2 cut(s)	292, 421
MaeI	CTAG	6 cut(s)	57, 114, 156, 395, 558, 569
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	3 cut(s)	123, 555, 607
MboI	GATC	3 cut(s)	121, 553, 605
MboII	GAAGA	2 cut(s)	473, 701
MflI	RGATCY	1 cut(s)	605
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	9 cut(s)	7, 98, 112, 143, 289, 316, 349, 502, 722
Mph1103I	ATGCAT	2 cut(s)	232, 445
MspI	CCGG	4 cut(s)	546, 645, 709, 735
MspR9I	CCNGG	4 cut(s)	547, 646, 710, 736
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	6 cut(s)	58, 67, 243, 434, 440, 532
NciI	CCSGG	4 cut(s)	547, 646, 710, 736
NdeII	GATC	3 cut(s)	121, 553, 605
NlaIII	CATG	3 cut(s)	335, 443, 688
NlaIV	GGNNCC	1 cut(s)	733
NmuCI	GTSAC	1 cut(s)	317
NsbI	TGCGCA	1 cut(s)	438
NsiI	ATGCAT	2 cut(s)	232, 445
NspI	RCATGY	2 cut(s)	335, 443
PaeI	GCATGC	2 cut(s)	335, 443
PcsI	WCGNNNNNNNCGW	2 cut(s)	145, 462
PkrI	GCNGC	3 cut(s)	248, 307, 436
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	733
PspPI	GGNCC	2 cut(s)	208, 732
PsuI	RGATCY	1 cut(s)	605
SatI	GCNGC	3 cut(s)	247, 306, 435
Sau3AI	GATC	3 cut(s)	121, 553, 605
Sau96I	GGNCC	2 cut(s)	208, 732
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	4 cut(s)	547, 646, 710, 736
SinI	GGWCC	1 cut(s)	208
SpeI	ACTAGT	1 cut(s)	394
SphI	GCATGC	2 cut(s)	335, 443
SsiI	CCGC	4 cut(s)	246, 423, 428, 512
SspMI	CTAG	6 cut(s)	57, 114, 156, 395, 558, 569
StyD4I	CCNGG	4 cut(s)	545, 644, 708, 734
StyI	CCWWGG	1 cut(s)	557
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	343, 453, 588
TauI	GCSGC	1 cut(s)	249
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	305, 434
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	2 cut(s)	20, 96
TspGWI	ACGGA	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	208
XbaI	TCTAGA	2 cut(s)	155, 568
XceI	RCATGY	2 cut(s)	335, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	557
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	6 cut(s)	57, 114, 156, 395, 558, 569
ZraI	GACGTC	1 cut(s)	137
Zsp2I	ATGCAT	2 cut(s)	232, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.