Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

39013904 .. 39014297

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG226700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGAGGGTGAGAAGGGGAAAATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTAAGGATAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTGGGAGATTTTGGTGGTGGATGAGCCGAATGTCAATGCGTTTTGCTTGTCGGGTGGGAAGATTGTGGTCTTCACAGGGTTGCTCAAGCATTTTAGAAGTGATGCTGATATAGCTATGATAATTGGTCATGAGGTTGGGCATGCCGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

97

Amino Acids

10.77

Weight (kDa)

5.08

Isoelectric Point (pI)

24.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	43 - 96	1.8e-14	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	20
BbrPI	CACGTG	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	269
BmsI	GCATC	2 cut(s)	103, 232
BpiI	GAAGAC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	3 cut(s)	52, 118, 166
BspHI	TCATGA	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	52, 118, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	284
BstV2I	GAAGAC	1 cut(s)	202
BtgI	CCRYGG	1 cut(s)	285
BtsCI	GGATG	3 cut(s)	52, 118, 166
Cac8I	GCNNGC	1 cut(s)	282
CciI	TCATGA	1 cut(s)	268
CviAII	CATG	2 cut(s)	269, 281
CviJI	RGCY	3 cut(s)	166, 254, 290
CviKI_1	RGCY	3 cut(s)	166, 254, 290
Eco72I	CACGTG	1 cut(s)	41
FaeI	CATG	2 cut(s)	272, 284
FaiI	YATR	5 cut(s)	78, 251, 257, 270, 282
FatI	CATG	2 cut(s)	268, 280
FokI	GGATG	3 cut(s)	59, 125, 173
Hin1II	CATG	2 cut(s)	272, 284
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	20
Hpy188III	TCNNGA	2 cut(s)	56, 269
HpyAV	CCTTC	2 cut(s)	7, 82
HpyCH4IV	ACGT	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	2 cut(s)	272, 284
LpnPI	CCDG	1 cut(s)	201
LweI	GCATC	2 cut(s)	103, 232
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	1 cut(s)	36
MboII	GAAGA	3 cut(s)	97, 202, 211
MluCI	AATT	2 cut(s)	31, 261
MnlI	CCTC	3 cut(s)	19, 37, 265
MseI	TTAA	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	272, 284
NmuCI	GTSAC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	284
PaeI	GCATGC	1 cut(s)	284
PagI	TCATGA	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	41
PmlI	CACGTG	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	41
PspCI	CACGTG	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	108
SetI	ASST	3 cut(s)	43, 256, 276
SfaNI	GCATC	2 cut(s)	103, 232
SgeI	CNNG	8 cut(s)	51, 53, 68, 199, 204, 228, 238, 281
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	31, 261
TaiI	ACGT	1 cut(s)	43
TasI	AATT	2 cut(s)	31, 261
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	36
Tsp45I	GTSAC	1 cut(s)	36
XceI	RCATGY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.