RLG00000019338

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
50522418 .. 50531429
9012 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019338

Sequence Viewer

Length: 432 bp
ATGGAGGGGAATTGGTCACGTGGGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTAAGGATAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTGGGAGATTTTGGTGGTGGATGAGCCGAATGTCAATGTGATTTGCTTGCCGGGTGGGAAGATTGTGGTCTTCATAGGGTTGCTCAAGCATTTTAGAAAAGCTGCAGCATATGGCAATGATGGGAATGAGGGATCAGACTGTGTGCATCAGTTTGTAATTTTGCAGAATTGTATTAAAGCTAATCCAGATGCCTTTTCTAACGACATTTCAGAAGAAGATGGAGTTAAAAAGGAGGAAAACCTAACCCAGGATTACAAAATTATCCTACCCTCATGGTCCAAAGAATCCCCCAGTCCAAAATCCAAGTTGTAG

Protein Analysis

144

Amino Acids

15.96

Weight (kDa)

5.06

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 259
AcvI CACGTG 1 cut(s) 20
AfiI CCNNNNNNNGG 1 cut(s) 367
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 2 cut(s) 221, 299
AluI AGCT 2 cut(s) 221, 299
AlwI GGATC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 221, 224
AspS9I GGNCC 1 cut(s) 396
AsuC2I CCSGG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 396
BbrPI CACGTG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 208, 236
BccI CCATC 2 cut(s) 233, 332
BciT130I CCWGG 1 cut(s) 368
BcnI CCSGG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 2 cut(s) 222, 225
BlsI GCNGC 2 cut(s) 223, 226
Bme1390I CCNGG 2 cut(s) 171, 368
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmrFI CCNGG 2 cut(s) 171, 368
BmrI ACTGGG 1 cut(s) 405
BmsI GCATC 3 cut(s) 82, 274, 298
BmuI ACTGGG 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 181
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 1 cut(s) 171
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 366
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 3 cut(s) 31, 97, 145
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 411
BseXI GCAGC 2 cut(s) 208, 236
BsiSI CCGG 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 367
Bsp143I GATC 1 cut(s) 251
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 241
BsrI ACTGG 1 cut(s) 411
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 260
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 3 cut(s) 31, 97, 145
BstKTI GATC 1 cut(s) 254
BstMBI GATC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 368
BstSCI CCNGG 2 cut(s) 169, 366
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 208, 236
BstV2I GAAGAC 1 cut(s) 181
BtsCI GGATG 3 cut(s) 31, 97, 145
Cac8I GCNNGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 396
CviAII CATG 1 cut(s) 393
CviJI RGCY 3 cut(s) 145, 221, 299
CviKI_1 RGCY 3 cut(s) 145, 221, 299
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 396
Eco72I CACGTG 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoRII CCWGG 1 cut(s) 366
FaeI CATG 1 cut(s) 396
FaiI YATR 5 cut(s) 57, 194, 229, 231, 394
FatI CATG 1 cut(s) 392
FauNDI CATATG 1 cut(s) 229
Fnu4HI GCNGC 2 cut(s) 222, 225
FokI GGATG 3 cut(s) 38, 104, 152
Fsp4HI GCNGC 2 cut(s) 222, 225
GluI GCNGC 2 cut(s) 222, 225
HapII CCGG 1 cut(s) 170
Hin1II CATG 1 cut(s) 396
HinfI GANTC 2 cut(s) 31, 404
HpaII CCGG 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 256, 331
Hpy188III TCNNGA 2 cut(s) 35, 305
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 224, 265, 283
HpySE526I ACGT 1 cut(s) 19
Hsp92II CATG 1 cut(s) 396
Kzo9I GATC 1 cut(s) 251
LpnPI CCDG 5 cut(s) 183, 318, 353, 380, 424
Lsp1109I GCAGC 2 cut(s) 208, 236
LweI GCATC 3 cut(s) 82, 274, 298
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 15
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 5 cut(s) 76, 181, 190, 344, 347
MluCI AATT 4 cut(s) 10, 276, 286, 378
MnlI CCTC 3 cut(s) 241, 346, 400
MseI TTAA 3 cut(s) 87, 294, 345
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 2 cut(s) 171, 368
MvaI CCWGG 1 cut(s) 368
NciI CCSGG 1 cut(s) 171
NdeI CATATG 1 cut(s) 229
NdeII GATC 1 cut(s) 251
NlaIII CATG 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 31, 404
PkrI GCNGC 2 cut(s) 223, 226
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
Ppu21I YACGTR 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 366
PspCI CACGTG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 366
PspPI GGNCC 1 cut(s) 396
PstI CTGCAG 1 cut(s) 226
SaqAI TTAA 3 cut(s) 87, 294, 345
SatI GCNGC 2 cut(s) 222, 225
Sau3AI GATC 1 cut(s) 251
Sau96I GGNCC 1 cut(s) 396
ScrFI CCNGG 2 cut(s) 171, 368
SetI ASST 4 cut(s) 22, 223, 301, 363
SfaNI GCATC 3 cut(s) 82, 274, 298
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 4 cut(s) 10, 276, 286, 378
StyD4I CCNGG 2 cut(s) 169, 366
TaaI ACNGT 1 cut(s) 260
TaiI ACGT 1 cut(s) 22
TasI AATT 4 cut(s) 10, 276, 286, 378
TfiI GAWTC 2 cut(s) 31, 404
Tru1I TTAA 3 cut(s) 87, 294, 345
Tru9I TTAA 3 cut(s) 87, 294, 345
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 2 cut(s) 221, 224
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.