Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

64733749 .. 64750607

Gene Structure 16859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG378900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTCAACGAAAAAGTTGAGTTATCACAAATTTCTGCAATTAATGTTGACTTCATAAGAGGCTGGGATCTGACAATGGCTGTGAGTGTATGTTTCATTCCTGATTTAAATGATGAGAAAGAGCCTGGTTATACTTGCTTGGCTGGCGGCAAGATTTTGGTTTCCACAGGGTTGCTTAGGTATTTTAACAGTGACGAGGAGATAGCTATGGTACTTGGTCATGAGGTTGCGCACGCTGTGGCTCGACATAGTGCAGAGGTCGTTACAAAATACATGTGGCTTCTAATACCGCATCTAAATTTTCAATGTTTTAGCGGTGCGGTTTCTGCGCATGCACACACATTTTACCAATTGTCCGACCTTTTATTTAGACTTCCTTTTTCCCGAAGGTTGGAACTGGAGGCAGATTACATTGGGCTGTTGTTGCTTGCTTCGGCCGGATATGATCCTAGGGTTGCTCTAGATGTGTGCCAGAAGTACAGCAAGCTTGTTGGTGAATCTCCAAACCAGAAAGATTATCTTTCTACCCATCCAACCGAGAAAAAGAGAGCTGAAAAGCTGGCTCAATCTCACGTCATGGAAGAAGCACTCTCTATATACAGGGATGTACAAGCTGGACGAGGGGCCGGGCAGGATAGTGCACTTTCGGAGCGTGCTAGGCTGATTGGCAAGGCTATTCTTGAGGCATTGAAGATAGGGTTGAGTCATTCGCATAGCTGGACCGATTGGACTGATGCCGAGACGGGTGTGATTCTCGATGAGCAGAGTAGTAGGAAGAAGAAGAAGGTGGGTGGCGCTACTTCGCATTTGGATGGTTTGAACTGGGAGATTTTGGTCCCGGAAAGTCCGAAAGACGCTGCAACGATTTGTTTACATGGTGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

295

Amino Acids

32.58

Weight (kDa)

5.95

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	47 - 188	1.1e-24	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	231, 330
AciI	CCGC	4 cut(s)	147, 290, 315, 320
AclWI	GGATC	2 cut(s)	75, 440
AcoI	YGGCCR	1 cut(s)	435
AcsI	RAATTY	2 cut(s)	30, 298
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	3 cut(s)	213, 479, 609
AfiI	CCNNNNNNNGG	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	3 cut(s)	305, 691, 820
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	6 cut(s)	206, 487, 551, 559, 614, 717
AluI	AGCT	6 cut(s)	206, 487, 551, 559, 614, 717
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	1 cut(s)	734
Alw44I	GTGCAC	1 cut(s)	639
AlwI	GGATC	2 cut(s)	75, 440
AoxI	GGCC	2 cut(s)	435, 624
ApaLI	GTGCAC	1 cut(s)	639
ApeKI	GCWGC	1 cut(s)	857
ApoI	RAATTY	2 cut(s)	30, 298
AseI	ATTAAT	1 cut(s)	42
AspA2I	CCTAGG	1 cut(s)	449
AspLEI	GCGC	3 cut(s)	232, 331, 797
AspS9I	GGNCC	3 cut(s)	624, 720, 835
AsuC2I	CCSGG	2 cut(s)	628, 839
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	720, 835
AvrII	CCTAGG	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	643
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	1 cut(s)	844
BccI	CCATC	2 cut(s)	537, 806
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	2 cut(s)	628, 839
BcoDI	GTCTC	1 cut(s)	734
BfaI	CTAG	3 cut(s)	450, 461, 657
BfoI	RGCGCY	1 cut(s)	798
BisI	GCNGC	2 cut(s)	148, 858
BlnI	CCTAGG	1 cut(s)	449
BlsI	GCNGC	2 cut(s)	149, 859
Bme1390I	CCNGG	3 cut(s)	126, 628, 839
Bme18I	GGWCC	2 cut(s)	720, 835
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	3 cut(s)	624, 720, 835
BmiI	GGNNCC	2 cut(s)	625, 837
BmrFI	CCNGG	3 cut(s)	126, 628, 839
BmrI	ACTGGG	1 cut(s)	832
BmsI	GCATC	2 cut(s)	301, 724
BmuI	ACTGGG	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	419
Bpu10I	CCTNAGC	1 cut(s)	176
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	2 cut(s)	628, 839
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	402, 827
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	3 cut(s)	529, 610, 817
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseNI	ACTGG	2 cut(s)	402, 827
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	643
BseX3I	CGGCCG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	844
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	273
Bsh1285I	CGRYCG	1 cut(s)	438
BshFI	GGCC	2 cut(s)	437, 626
BsiEI	CGRYCG	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	3 cut(s)	438, 627, 839
BslFI	GGGAC	1 cut(s)	821
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	734
BsmBI	CGTCTC	1 cut(s)	734
BsmFI	GGGAC	1 cut(s)	821
BsnI	GGCC	2 cut(s)	437, 626
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp1407I	TGTACA	1 cut(s)	607
Bsp143I	GATC	2 cut(s)	67, 445
BspACI	CCGC	4 cut(s)	147, 290, 315, 320
BspANI	GGCC	2 cut(s)	437, 626
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	625, 837
BspPI	GGATC	2 cut(s)	75, 440
BsrGI	TGTACA	1 cut(s)	607
BsrI	ACTGG	2 cut(s)	402, 827
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	2 cut(s)	67, 445
BssT1I	CCWWGG	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	607
BstC8I	GCNNGC	7 cut(s)	145, 234, 333, 429, 485, 561, 654
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	3 cut(s)	529, 610, 817
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	3 cut(s)	232, 331, 797
BstKTI	GATC	2 cut(s)	70, 448
BstMAI	GTCTC	1 cut(s)	734
BstMBI	GATC	2 cut(s)	67, 445
BstMCI	CGRYCG	1 cut(s)	438
BstMWI	GCNNNNNNNGC	4 cut(s)	144, 326, 424, 658
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	2 cut(s)	277, 335
BstSCI	CCNGG	3 cut(s)	124, 626, 837
BstSLI	GKGCMC	1 cut(s)	643
BstV1I	GCAGC	1 cut(s)	844
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BstZI	CGGCCG	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	437, 626
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	3 cut(s)	529, 610, 817
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	7 cut(s)	145, 234, 333, 429, 485, 561, 654
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	3 cut(s)	232, 331, 797
Cfr13I	GGNCC	3 cut(s)	624, 720, 835
CseI	GACGC	1 cut(s)	863
Csp6I	GTAC	3 cut(s)	212, 478, 608
CviAII	CATG	5 cut(s)	221, 274, 332, 577, 875
CviQI	GTAC	3 cut(s)	212, 478, 608
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	69, 447
DpnII	GATC	2 cut(s)	67, 445
DraI	TTTAAA	1 cut(s)	108
DraIII	CACNNNGTG	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	435
EagI	CGGCCG	1 cut(s)	435
EclXI	CGGCCG	1 cut(s)	435
Eco130I	CCWWGG	1 cut(s)	449
Eco47I	GGWCC	2 cut(s)	720, 835
Eco52I	CGGCCG	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	449
ErhI	CCWWGG	1 cut(s)	449
Esp3I	CGTCTC	1 cut(s)	734
FaeI	CATG	5 cut(s)	224, 277, 335, 580, 878
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FaqI	GGGAC	1 cut(s)	821
FatI	CATG	5 cut(s)	220, 273, 331, 576, 874
Fnu4HI	GCNGC	2 cut(s)	148, 858
FokI	GGATG	3 cut(s)	516, 617, 824
Fsp4HI	GCNGC	2 cut(s)	148, 858
FspBI	CTAG	3 cut(s)	450, 461, 657
FspI	TGCGCA	2 cut(s)	231, 330
GlaI	GCGC	3 cut(s)	231, 330, 796
GluI	GCNGC	2 cut(s)	148, 858
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	419
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	2 cut(s)	437, 626
HapII	CCGG	3 cut(s)	438, 627, 839
HgaI	GACGC	1 cut(s)	863
HhaI	GCGC	3 cut(s)	232, 331, 797
Hin1II	CATG	5 cut(s)	224, 277, 335, 580, 878
Hin6I	GCGC	3 cut(s)	230, 329, 795
HinP1I	GCGC	3 cut(s)	230, 329, 795
HincII	GTYRAC	2 cut(s)	7, 49
HindII	GTYRAC	2 cut(s)	7, 49
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	497, 703, 751
HpaII	CCGG	3 cut(s)	438, 627, 839
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	4 cut(s)	7, 49, 641, 872
Hpy188I	TCNGA	4 cut(s)	72, 358, 649, 849
Hpy188III	TCNNGA	6 cut(s)	101, 221, 384, 461, 680, 755
Hpy8I	GTNNAC	4 cut(s)	7, 49, 641, 872
HpyAV	CCTTC	2 cut(s)	381, 778
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	5 cut(s)	38, 254, 335, 641, 860
HpyF10VI	GCNNNNNNNGC	4 cut(s)	144, 326, 424, 658
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	5 cut(s)	224, 277, 335, 580, 878
HspAI	GCGC	3 cut(s)	230, 329, 795
Kzo9I	GATC	2 cut(s)	67, 445
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	1 cut(s)	844
LweI	GCATC	2 cut(s)	301, 724
MaeI	CTAG	3 cut(s)	450, 461, 657
MaeII	ACGT	1 cut(s)	573
MaeIII	GTNAC	2 cut(s)	191, 262
MalI	GATC	2 cut(s)	69, 447
MboI	GATC	2 cut(s)	67, 445
MboII	GAAGA	5 cut(s)	593, 703, 787, 790, 793
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	4 cut(s)	30, 39, 298, 350
MlyI	GAGTC	1 cut(s)	712
MmeI	TCCRAC	3 cut(s)	372, 381, 557
MnlI	CCTC	7 cut(s)	53, 190, 217, 250, 394, 614, 676
MseI	TTAA	3 cut(s)	42, 107, 186
MslI	CAYNNNNRTG	1 cut(s)	810
MspI	CCGG	3 cut(s)	438, 627, 839
MspR9I	CCNGG	3 cut(s)	126, 628, 839
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	144, 326, 424, 658
NciI	CCSGG	2 cut(s)	628, 839
NdeII	GATC	2 cut(s)	67, 445
NlaIII	CATG	5 cut(s)	224, 277, 335, 580, 878
NlaIV	GGNNCC	2 cut(s)	625, 837
NmeAIII	GCCGAG	1 cut(s)	763
NmuCI	GTSAC	1 cut(s)	191
NsbI	TGCGCA	2 cut(s)	231, 330
NspI	RCATGY	2 cut(s)	277, 335
PaeI	GCATGC	1 cut(s)	335
PagI	TCATGA	1 cut(s)	220
PciI	ACATGT	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	497, 751
PfoI	TCCNGGA	1 cut(s)	837
PkrI	GCNGC	2 cut(s)	149, 859
PleI	GAGTC	1 cut(s)	711
PpsI	GAGTC	1 cut(s)	711
PscI	ACATGT	1 cut(s)	273
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	2 cut(s)	625, 837
PspPI	GGNCC	3 cut(s)	624, 720, 835
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	3 cut(s)	213, 479, 609
RsaNI	GTAC	3 cut(s)	212, 478, 608
RseI	CAYNNNNRTG	1 cut(s)	810
SaqAI	TTAA	3 cut(s)	42, 107, 186
SatI	GCNGC	2 cut(s)	148, 858
Sau3AI	GATC	2 cut(s)	67, 445
Sau96I	GGNCC	3 cut(s)	624, 720, 835
SchI	GAGTC	1 cut(s)	712
ScrFI	CCNGG	3 cut(s)	126, 628, 839
SduI	GDGCHC	1 cut(s)	643
SfaNI	GCATC	2 cut(s)	301, 724
SinI	GGWCC	2 cut(s)	720, 835
SmiI	ATTTAAAT	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	4 cut(s)	30, 39, 298, 350
SsiI	CCGC	4 cut(s)	147, 290, 315, 320
SspMI	CTAG	3 cut(s)	450, 461, 657
StyD4I	CCNGG	3 cut(s)	124, 626, 837
StyI	CCWWGG	1 cut(s)	449
SwaI	ATTTAAAT	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	2 cut(s)	244, 756
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	4 cut(s)	30, 39, 298, 350
TatI	WGTACW	2 cut(s)	477, 607
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	497, 751
Tru1I	TTAA	3 cut(s)	42, 107, 186
Tru9I	TTAA	3 cut(s)	42, 107, 186
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	191
TseI	GCWGC	1 cut(s)	857
Tsp45I	GTSAC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	43, 85
TspRI	CASTG	1 cut(s)	196
VneI	GTGCAC	1 cut(s)	639
VpaK11BI	GGWCC	2 cut(s)	720, 835
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	2 cut(s)	30, 298
XbaI	TCTAGA	1 cut(s)	460
XceI	RCATGY	2 cut(s)	277, 335
XmaJI	CCTAGG	1 cut(s)	449
XspI	CTAG	3 cut(s)	450, 461, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.