Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

38296739 .. 38301087

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAATCGTTGCTCGGGGACTTGGAAAACACTGTGGAATAGATGTTGTTCGAAAGCTTCGGGATACCCCAAGAGCAATATCAATCGTTGGCAAGTTAAATCTGTGATTTCGCTGCAAGAAAAGTACATTCTAGAATTTGGTCTTTCCGTTAGGCCACATGAGATCCCCGAACTTTTGAGTTTCTTGTGGGGATGTGATGTTGTCGGTGGCCACGCCTTCATAGAGCGGCATGAACGGGTTTGGTCCGATATAGCCACCGTATGGCTCCTCATTGGTGTTCTTGACTTTGTTTTCGAGGGTAACCTCGAACAAATCCCTAGATTGGCCAAAGATATTGTCTATAAGCTTCCACCTGTCTCTCTCTCTTTACGCACAACCTCGGAAGAACGAGAGGAGACGTTGACCGTCCGCAAACGCGCCGAGCCCACAAACCCCGGTTCGAACTTCCTCACAGCTCAAGACGCCGCCATCTCCGCCGGCGAGCTCACCAAGCTTGTCCCCGGGAGAATCGAACAGCGAGAAACCAGCTCCGATCAAGTCAAGCCTTGCTTGTTGCCGGAGTTCCGAACTAGAAGCTGCGGCTGCGGAGGCTTTCGACCGAGATCAACCGGCTTCTCATCTCGCAACACCGCCACCGTCACCGTCACCGATAGCACCGCCGCCACCTTGACTACCAAAAACGTCACAGTTTGGAACCACGGGGGATCCGCTCCTTCTACTCCTCTGGTTTCCTTCTTCGTTTCAGATTTTGGGATTAAGTCTGGGGATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTAAGGTTAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTGGGAGATTTTGTTGGTGGATGAGCCGAATGTCAATGTGTTTTGCTTGCCGGTGGGAAGATTGTGGTCTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

316

Amino Acids

35.31

Weight (kDa)

7.0

Isoelectric Point (pI)

42.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	261
AccBSI	CCGCTC	2 cut(s)	226, 710
AccII	CGCG	1 cut(s)	417
AclWI	GGATC	3 cut(s)	157, 699, 712
AcoI	YGGCCR	2 cut(s)	208, 324
AcsI	RAATTY	1 cut(s)	134
AcvI	CACGTG	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	261, 322
AluBI	AGCT	7 cut(s)	56, 346, 455, 484, 493, 528, 576
AluI	AGCT	7 cut(s)	56, 346, 455, 484, 493, 528, 576
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	361, 389
AlwI	GGATC	3 cut(s)	157, 699, 712
Ama87I	CYCGRG	2 cut(s)	13, 500
AoxI	GGCC	3 cut(s)	152, 208, 324
ApeKI	GCWGC	3 cut(s)	112, 576, 582
ApoI	RAATTY	1 cut(s)	134
ArsI	GACNNNNNNTTYG	4 cut(s)	275, 307, 321, 353
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	3 cut(s)	435, 501, 502
AsuHPI	GGTGA	3 cut(s)	478, 631, 637
AsuII	TTCGAA	2 cut(s)	50, 440
AvaI	CYCGRG	2 cut(s)	13, 500
AvaII	GGWCC	1 cut(s)	243
BalI	TGGCCA	2 cut(s)	210, 326
BamHI	GGATCC	1 cut(s)	704
BanII	GRGCYC	2 cut(s)	426, 486
BbrPI	CACGTG	1 cut(s)	776
BbsI	GAAGAC	1 cut(s)	936
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	3 cut(s)	99, 563, 569
BccI	CCATC	1 cut(s)	476
BciVI	GTATCC	1 cut(s)	56
BcnI	CCSGG	3 cut(s)	435, 501, 502
BcoDI	GTCTC	2 cut(s)	361, 389
BfaI	CTAG	3 cut(s)	131, 318, 570
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	7 cut(s)	113, 227, 465, 577, 580, 583, 660
BlsI	GCNGC	7 cut(s)	114, 228, 466, 578, 581, 584, 661
Bme1390I	CCNGG	3 cut(s)	435, 501, 502
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	2 cut(s)	13, 500
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	266, 695, 706
BmrFI	CCNGG	3 cut(s)	435, 501, 502
BmsI	GCATC	1 cut(s)	838
BpiI	GAAGAC	1 cut(s)	936
Bpu14I	TTCGAA	2 cut(s)	50, 440
BpuEI	CTTGAG	1 cut(s)	441
BpuMI	CCSGG	3 cut(s)	435, 501, 502
BsaAI	YACGTR	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	5 cut(s)	378, 433, 499, 500, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 322
Bse118I	RCCGGY	3 cut(s)	476, 608, 925
BseDI	CCNNGG	5 cut(s)	378, 433, 499, 500, 697
BseGI	GGATG	4 cut(s)	197, 787, 853, 901
BseLI	CCNNNNNNNGG	2 cut(s)	261, 322
BseRI	GAGGAG	3 cut(s)	257, 407, 711
BseXI	GCAGC	3 cut(s)	99, 563, 569
Bsh1236I	CGCG	1 cut(s)	417
Bsh1285I	CGRYCG	1 cut(s)	599
BshFI	GGCC	3 cut(s)	154, 210, 326
BsiEI	CGRYCG	1 cut(s)	599
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	2 cut(s)	13, 500
BsiSI	CCGG	6 cut(s)	435, 477, 501, 557, 609, 926
BslFI	GGGAC	2 cut(s)	31, 482
BslI	CCNNNNNNNGG	2 cut(s)	261, 322
BsmAI	GTCTC	2 cut(s)	361, 389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	2 cut(s)	31, 482
BsnI	GGCC	3 cut(s)	154, 210, 326
BsoBI	CYCGRG	2 cut(s)	13, 500
Bsp119I	TTCGAA	2 cut(s)	50, 440
Bsp1286I	GDGCHC	2 cut(s)	426, 486
Bsp143I	GATC	4 cut(s)	162, 532, 602, 704
BspANI	GGCC	3 cut(s)	154, 210, 326
BspFNI	CGCG	1 cut(s)	417
BspLI	GGNNCC	3 cut(s)	266, 695, 706
BspPI	GGATC	3 cut(s)	157, 699, 712
BspT104I	TTCGAA	2 cut(s)	50, 440
BsrBI	CCGCTC	2 cut(s)	226, 710
BsrFI	RCCGGY	3 cut(s)	476, 608, 925
BssAI	RCCGGY	3 cut(s)	476, 608, 925
BssECI	CCNNGG	5 cut(s)	378, 433, 499, 500, 697
BssMI	GATC	4 cut(s)	162, 532, 602, 704
BssNI	GRCGYC	1 cut(s)	462
Bst4CI	ACNGT	6 cut(s)	33, 259, 406, 637, 643, 688
BstACI	GRCGYC	1 cut(s)	462
BstBAI	YACGTR	1 cut(s)	776
BstBI	TTCGAA	2 cut(s)	50, 440
BstC8I	GCNNGC	3 cut(s)	478, 482, 923
BstDSI	CCRYGG	1 cut(s)	697
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	4 cut(s)	197, 787, 853, 901
BstFNI	CGCG	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	4 cut(s)	165, 535, 605, 707
BstMAI	GTCTC	2 cut(s)	361, 389
BstMBI	GATC	4 cut(s)	162, 532, 602, 704
BstMCI	CGRYCG	1 cut(s)	599
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 473, 490, 582, 588
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	433, 499, 500
BstUI	CGCG	1 cut(s)	417
BstV1I	GCAGC	3 cut(s)	99, 563, 569
BstV2I	GAAGAC	1 cut(s)	936
BstX2I	RGATCY	2 cut(s)	162, 704
BstYI	RGATCY	2 cut(s)	162, 704
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	3 cut(s)	154, 210, 326
BtgI	CCRYGG	1 cut(s)	697
BtsCI	GGATG	4 cut(s)	197, 787, 853, 901
BtsIMutI	CAGTG	1 cut(s)	29
Cac8I	GCNNGC	3 cut(s)	478, 482, 923
CfoI	GCGC	1 cut(s)	419
Cfr10I	RCCGGY	3 cut(s)	476, 608, 925
Cfr13I	GGNCC	1 cut(s)	243
Cfr9I	CCCGGG	1 cut(s)	500
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	158, 230
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	4 cut(s)	164, 534, 604, 706
DpnII	GATC	4 cut(s)	162, 532, 602, 704
EaeI	YGGCCR	2 cut(s)	208, 324
EciI	GGCGGA	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	2 cut(s)	426, 486
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	484
Eco72I	CACGTG	1 cut(s)	776
Eco88I	CYCGRG	2 cut(s)	13, 500
Eco91I	GGTNACC	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	484
EcoO65I	GGTNACC	1 cut(s)	299
EcoT38I	GRGCYC	2 cut(s)	426, 486
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	2 cut(s)	161, 233
FaiI	YATR	8 cut(s)	159, 221, 231, 251, 262, 342, 813, 949
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FaqI	GGGAC	2 cut(s)	31, 482
FatI	CATG	2 cut(s)	157, 229
Fnu4HI	GCNGC	7 cut(s)	113, 227, 465, 577, 580, 583, 660
FokI	GGATG	4 cut(s)	204, 794, 860, 908
FriOI	GRGCYC	2 cut(s)	426, 486
Fsp4HI	GCNGC	7 cut(s)	113, 227, 465, 577, 580, 583, 660
FspBI	CTAG	3 cut(s)	131, 318, 570
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	7 cut(s)	113, 227, 465, 577, 580, 583, 660
HaeIII	GGCC	3 cut(s)	154, 210, 326
HapII	CCGG	6 cut(s)	435, 477, 501, 557, 609, 926
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	419
Hin1I	GRCGYC	1 cut(s)	462
Hin1II	CATG	2 cut(s)	161, 233
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	3 cut(s)	54, 344, 491
HinfI	GANTC	3 cut(s)	4, 507, 787
HpaII	CCGG	6 cut(s)	435, 477, 501, 557, 609, 926
HphI	GGTGA	3 cut(s)	478, 631, 637
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	5 cut(s)	247, 382, 532, 566, 745
Hpy188III	TCNNGA	5 cut(s)	60, 131, 281, 458, 791
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	4 cut(s)	226, 723, 742, 817
HpyCH4III	ACNGT	6 cut(s)	33, 259, 406, 637, 643, 688
HpyCH4IV	ACGT	3 cut(s)	398, 681, 775
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 473, 490, 582, 588
HpySE526I	ACGT	3 cut(s)	398, 681, 775
Hsp92I	GRCGYC	1 cut(s)	462
Hsp92II	CATG	2 cut(s)	161, 233
HspAI	GCGC	1 cut(s)	417
KroI	GCCGGC	1 cut(s)	476
KroNI	GCCGGC	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	162, 532, 602, 704
LmnI	GCTCC	3 cut(s)	270, 533, 715
Lsp1109I	GCAGC	3 cut(s)	99, 563, 569
LweI	GCATC	1 cut(s)	838
MaeI	CTAG	3 cut(s)	131, 318, 570
MaeII	ACGT	3 cut(s)	398, 681, 775
MaeIII	GTNAC	5 cut(s)	299, 637, 643, 682, 771
MalI	GATC	4 cut(s)	164, 534, 604, 706
MbiI	CCGCTC	2 cut(s)	226, 710
MboI	GATC	4 cut(s)	162, 532, 602, 704
MboII	GAAGA	5 cut(s)	395, 727, 832, 936, 945
MflI	RGATCY	2 cut(s)	162, 704
MhlI	GDGCHC	2 cut(s)	426, 486
MlsI	TGGCCA	2 cut(s)	210, 326
MluCI	AATT	1 cut(s)	134
MluNI	TGGCCA	2 cut(s)	210, 326
MnlI	CCTC	9 cut(s)	278, 289, 314, 385, 388, 458, 581, 732, 772
Mox20I	TGGCCA	2 cut(s)	210, 326
MreI	CGCCGGCG	1 cut(s)	476
MroNI	GCCGGC	1 cut(s)	476
MscI	TGGCCA	2 cut(s)	210, 326
MseI	TTAA	3 cut(s)	96, 756, 843
Msp20I	TGGCCA	2 cut(s)	210, 326
MspI	CCGG	6 cut(s)	435, 477, 501, 557, 609, 926
MspR9I	CCNGG	3 cut(s)	435, 501, 502
MvnI	CGCG	1 cut(s)	417
MwoI	GCNNNNNNNGC	5 cut(s)	461, 473, 490, 582, 588
NaeI	GCCGGC	1 cut(s)	478
NciI	CCSGG	3 cut(s)	435, 501, 502
NdeII	GATC	4 cut(s)	162, 532, 602, 704
NgoMIV	GCCGGC	1 cut(s)	476
NlaIII	CATG	2 cut(s)	161, 233
NlaIV	GGNNCC	3 cut(s)	266, 695, 706
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	4 cut(s)	637, 643, 682, 771
NspV	TTCGAA	2 cut(s)	50, 440
PdiI	GCCGGC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	4, 507, 787
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	7 cut(s)	114, 228, 466, 578, 581, 584, 661
PmaCI	CACGTG	1 cut(s)	776
PmlI	CACGTG	1 cut(s)	776
Ppu21I	YACGTR	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	486
PspCI	CACGTG	1 cut(s)	776
PspEI	GGTNACC	1 cut(s)	299
PspN4I	GGNNCC	3 cut(s)	266, 695, 706
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	2 cut(s)	162, 704
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	3 cut(s)	96, 756, 843
SatI	GCNGC	7 cut(s)	113, 227, 465, 577, 580, 583, 660
Sau3AI	GATC	4 cut(s)	162, 532, 602, 704
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	3 cut(s)	435, 501, 502
SduI	GDGCHC	2 cut(s)	426, 486
SfaNI	GCATC	1 cut(s)	838
SfuI	TTCGAA	2 cut(s)	50, 440
SgrAI	CRCCGGYG	1 cut(s)	476
SinI	GGWCC	1 cut(s)	243
SmaI	CCCGGG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	456
SmoI	CTYRAG	1 cut(s)	456
Sse9I	AATT	1 cut(s)	134
SspMI	CTAG	3 cut(s)	131, 318, 570
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	433, 499, 500
TaaI	ACNGT	6 cut(s)	33, 259, 406, 637, 643, 688
TaiI	ACGT	3 cut(s)	401, 684, 778
TaqI	TCGA	6 cut(s)	50, 294, 306, 440, 510, 595
TaqII	GACCGA	1 cut(s)	613
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	4 cut(s)	229, 467, 582, 662
TfiI	GAWTC	3 cut(s)	4, 507, 787
Tru1I	TTAA	3 cut(s)	96, 756, 843
Tru9I	TTAA	3 cut(s)	96, 756, 843
TscAI	CASTG	1 cut(s)	36
TseFI	GTSAC	4 cut(s)	637, 643, 682, 771
TseI	GCWGC	3 cut(s)	112, 576, 582
Tsp45I	GTSAC	4 cut(s)	637, 643, 682, 771
TspDTI	ATGAA	4 cut(s)	17, 208, 246, 936
TspGWI	ACGGA	1 cut(s)	136
TspMI	CCCGGG	1 cut(s)	500
TspRI	CASTG	1 cut(s)	36
Van91I	CCANNNNNTGG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	130
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XmaI	CCCGGG	1 cut(s)	500
XspI	CTAG	3 cut(s)	131, 318, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.