Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

62809203 .. 62810551

Gene Structure 1349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCTGGGAGAGTACACATTTGAGGAGATGAAAAAAGAGAAGACTAGATCGAGGCAGCATATATTGTCTGATAGATACTTGCAAACCAGACGTGTTAGGCGGATTGCCAATGAAATAACTCAGGCATTGATGAGAGGTATAAGTAGGGAGGATAAAGAGAAGGGGGGTCGGTGGTGGCGAGGCTCTAGAGTCGCCACTTCGCATTTGGATGGGTTGCTTAGGCATTTTAAAAGTGATGAGGAGATAGCTACGATACTTGGTCATGAGGTTGGGCATGCTGTGGCTCGACATGCTGCAGAGACCATTACAAACTACACGTGGCTTGTAATTTTCTTTCAATTTTTTAGCGGTGCGGTTGCTGCACACTCATTCGACAAATTGTCAAACCTTTTATTTAGTCTTCCTTTATCGAAGATGGAAATGGAGGCGGATTACATTGGGCTGTTGTTGCTTGCTTCTGCCGGGTATGATCCTATGGTTGCTCCAGGTGTGTACCAGAAGTTTAGCAAGCTTGCTGGTGAAACTCCAAACCAGAAAGATTATCTTTCTACCCATCCAACCGGGAAAAAGAGAGCTGAAAAGCTGGCTCAAGCTAACGTCATGAAAGAAGCACTCTATATACCAGGATGTACAAGCAGCACGTGGGGGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

217

Amino Acids

24.57

Weight (kDa)

9.36

Isoelectric Point (pI)

33.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	56 - 197	3.7e-18	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	100, 348, 353, 428
AclWI	GGATC	1 cut(s)	464
AcvI	CACGTG	2 cut(s)	318, 642
AfaI	GTAC	3 cut(s)	14, 494, 631
AflIII	ACRYGT	2 cut(s)	91, 315
AgsI	TTSAA	1 cut(s)	338
AhdI	GACNNNNNGTC	1 cut(s)	379
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	2 cut(s)	484, 622
AluBI	AGCT	5 cut(s)	248, 511, 575, 583, 593
AluI	AGCT	5 cut(s)	248, 511, 575, 583, 593
Alw26I	GTCTC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	464
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	4 cut(s)	55, 293, 359, 636
AspS9I	GGNCC	1 cut(s)	647
AsuC2I	CCSGG	2 cut(s)	463, 562
AsuHPI	GGTGA	1 cut(s)	530
BbrPI	CACGTG	2 cut(s)	318, 642
BbsI	GAAGAC	2 cut(s)	47, 392
BbvI	GCAGC	4 cut(s)	67, 280, 346, 648
BccI	CCATC	3 cut(s)	203, 409, 561
BceAI	ACGGC	1 cut(s)	634
BciT130I	CCWGG	2 cut(s)	486, 624
BcnI	CCSGG	2 cut(s)	463, 562
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	45, 186
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	4 cut(s)	56, 294, 360, 637
BlsI	GCNGC	4 cut(s)	57, 295, 361, 638
Bme1390I	CCNGG	4 cut(s)	463, 486, 562, 624
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	647
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	4 cut(s)	463, 486, 562, 624
BpiI	GAAGAC	2 cut(s)	47, 392
BpmI	CTGGAG	1 cut(s)	468
Bpu10I	CCTNAGC	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	573
BpuMI	CCSGG	2 cut(s)	463, 562
BsaAI	YACGTR	2 cut(s)	318, 642
BsaI	GGTCTC	1 cut(s)	293
BseBI	CCWGG	2 cut(s)	486, 624
BseGI	GGATG	3 cut(s)	214, 553, 632
BseMII	CTCAG	1 cut(s)	134
BseRI	GAGGAG	2 cut(s)	38, 254
BseXI	GCAGC	4 cut(s)	67, 280, 346, 648
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	1 cut(s)	649
BsiSI	CCGG	2 cut(s)	462, 561
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	649
Bso31I	GGTCTC	1 cut(s)	293
Bsp1407I	TGTACA	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	47, 469
BspACI	CCGC	4 cut(s)	100, 348, 353, 428
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	1 cut(s)	133
BspHI	TCATGA	2 cut(s)	262, 600
BspLI	GGNNCC	1 cut(s)	648
BspMAI	CTGCAG	1 cut(s)	298
BspPI	GGATC	1 cut(s)	464
BspTNI	GGTCTC	1 cut(s)	293
BsrGI	TGTACA	1 cut(s)	629
BssMI	GATC	2 cut(s)	47, 469
Bst2UI	CCWGG	2 cut(s)	486, 624
BstAUI	TGTACA	1 cut(s)	629
BstBAI	YACGTR	2 cut(s)	318, 642
BstC8I	GCNNGC	5 cut(s)	276, 453, 509, 513, 585
BstDEI	CTNAG	2 cut(s)	120, 218
BstF5I	GGATG	3 cut(s)	214, 553, 632
BstKTI	GATC	2 cut(s)	50, 472
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	47, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 359, 448
BstNI	CCWGG	2 cut(s)	486, 624
BstNSI	RCATGY	2 cut(s)	278, 293
BstSCI	CCNGG	4 cut(s)	461, 484, 560, 622
BstSFI	CTRYAG	1 cut(s)	294
BstV1I	GCAGC	4 cut(s)	67, 280, 346, 648
BstV2I	GAAGAC	2 cut(s)	47, 392
BsuRI	GGCC	1 cut(s)	649
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	214, 553, 632
Cac8I	GCNNGC	5 cut(s)	276, 453, 509, 513, 585
CciI	TCATGA	2 cut(s)	262, 600
Cfr13I	GGNCC	1 cut(s)	647
Csp6I	GTAC	3 cut(s)	13, 493, 630
CviAII	CATG	4 cut(s)	263, 275, 290, 601
CviQI	GTAC	3 cut(s)	13, 493, 630
DdeI	CTNAG	2 cut(s)	120, 218
DpnI	GATC	2 cut(s)	49, 471
DpnII	GATC	2 cut(s)	47, 469
DraI	TTTAAA	1 cut(s)	229
DriI	GACNNNNNGTC	1 cut(s)	379
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EciI	GGCGGA	2 cut(s)	115, 443
Eco31I	GGTCTC	1 cut(s)	293
Eco72I	CACGTG	2 cut(s)	318, 642
EcoRII	CCWGG	2 cut(s)	484, 622
FaeI	CATG	4 cut(s)	266, 278, 293, 604
FalI	AAGNNNNNCTT	2 cut(s)	528, 560
FatI	CATG	4 cut(s)	262, 274, 289, 600
Fnu4HI	GCNGC	4 cut(s)	56, 294, 360, 637
FokI	GGATG	3 cut(s)	221, 540, 639
Fsp4HI	GCNGC	4 cut(s)	56, 294, 360, 637
FspBI	CTAG	2 cut(s)	45, 186
GluI	GCNGC	4 cut(s)	56, 294, 360, 637
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	2 cut(s)	462, 561
Hin1II	CATG	4 cut(s)	266, 278, 293, 604
HindIII	AAGCTT	1 cut(s)	509
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	462, 561
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	15, 493
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	3 cut(s)	186, 263, 601
Hpy8I	GTNNAC	2 cut(s)	15, 493
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	4 cut(s)	91, 317, 597, 641
HpyCH4V	TGCA	3 cut(s)	82, 296, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 359, 448
HpyF3I	CTNAG	2 cut(s)	120, 218
HpySE526I	ACGT	4 cut(s)	91, 317, 597, 641
Hsp92II	CATG	4 cut(s)	266, 278, 293, 604
Kzo9I	GATC	2 cut(s)	47, 469
LmnI	GCTCC	1 cut(s)	487
Lsp1109I	GCAGC	4 cut(s)	67, 280, 346, 648
MaeI	CTAG	2 cut(s)	45, 186
MaeII	ACGT	4 cut(s)	91, 317, 597, 641
MalI	GATC	2 cut(s)	49, 471
MboI	GATC	2 cut(s)	47, 469
MboII	GAAGA	3 cut(s)	52, 392, 424
MluCI	AATT	3 cut(s)	327, 338, 377
MlyI	GAGTC	1 cut(s)	198
MmeI	TCCRAC	1 cut(s)	581
MnlI	CCTC	8 cut(s)	16, 45, 128, 142, 173, 232, 259, 418
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	207
MspI	CCGG	2 cut(s)	462, 561
MspR9I	CCNGG	4 cut(s)	463, 486, 562, 624
MvaI	CCWGG	2 cut(s)	486, 624
MwoI	GCNNNNNNNGC	3 cut(s)	290, 359, 448
NciI	CCSGG	2 cut(s)	463, 562
NdeII	GATC	2 cut(s)	47, 469
NlaIII	CATG	4 cut(s)	266, 278, 293, 604
NlaIV	GGNNCC	1 cut(s)	648
NspI	RCATGY	2 cut(s)	278, 293
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	2 cut(s)	262, 600
PcsI	WCGNNNNNNNCGW	2 cut(s)	175, 647
PkrI	GCNGC	4 cut(s)	57, 295, 361, 638
PleI	GAGTC	1 cut(s)	197
PmaCI	CACGTG	2 cut(s)	318, 642
PmlI	CACGTG	2 cut(s)	318, 642
PpsI	GAGTC	1 cut(s)	197
Ppu21I	YACGTR	2 cut(s)	318, 642
Psp6I	CCWGG	2 cut(s)	484, 622
PspCI	CACGTG	2 cut(s)	318, 642
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	2 cut(s)	484, 622
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	298
RsaI	GTAC	3 cut(s)	14, 494, 631
RsaNI	GTAC	3 cut(s)	13, 493, 630
RseI	CAYNNNNRTG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	56, 294, 360, 637
Sau3AI	GATC	2 cut(s)	47, 469
Sau96I	GGNCC	1 cut(s)	647
SchI	GAGTC	1 cut(s)	198
ScrFI	CCNGG	4 cut(s)	463, 486, 562, 624
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	588
SmoI	CTYRAG	1 cut(s)	588
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	3 cut(s)	327, 338, 377
SsiI	CCGC	4 cut(s)	100, 348, 353, 428
SspMI	CTAG	2 cut(s)	45, 186
StyD4I	CCNGG	4 cut(s)	461, 484, 560, 622
TaiI	ACGT	4 cut(s)	94, 320, 600, 644
TaqI	TCGA	4 cut(s)	50, 286, 372, 410
TasI	AATT	3 cut(s)	327, 338, 377
TatI	WGTACW	2 cut(s)	12, 629
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	4 cut(s)	55, 293, 359, 636
TspDTI	ATGAA	3 cut(s)	44, 126, 617
XbaI	TCTAGA	1 cut(s)	185
XceI	RCATGY	2 cut(s)	278, 293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	2 cut(s)	45, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.