Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

41051142 .. 41051444

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00360550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATCAGGAGTGGACCGACATGGGAGATGCATCGGAGGAAGTCGACCGGAATTCGAAGGTCGGGGAGTAAGACTGTGCAGTCATTGATGGAGGGTGAGAAGAGGAAAATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTAAGGATAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTGGGAGATTTTGTTGGTGGATGAACCGAATGTCATTGTATTTTGCTTGCCGGTGGGAAGATTGTGGTCTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

100

Amino Acids

11.59

Weight (kDa)

7.91

Isoelectric Point (pI)

64.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	44
AcsI	RAATTY	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	288
BccI	CCATC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	3
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmsI	GCATC	3 cut(s)	18, 40, 190
BpiI	GAAGAC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bse118I	RCCGGY	1 cut(s)	277
BseGI	GGATG	3 cut(s)	139, 205, 253
BsgI	GTGCAG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	48
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	48, 278
Bsp119I	TTCGAA	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	277
BssAI	RCCGGY	1 cut(s)	277
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	76
Bst6I	CTCTTC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	139, 205, 253
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	48
BstV2I	GAAGAC	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	139, 205, 253
Cac8I	GCNNGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	1 cut(s)	21
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	1 cut(s)	79
DseDI	GACNNNNNNGTC	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	14
Eco72I	CACGTG	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	33
FaeI	CATG	1 cut(s)	24
FaiI	YATR	2 cut(s)	22, 165
FatI	CATG	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	44
FokI	GGATG	3 cut(s)	146, 212, 260
HapII	CCGG	2 cut(s)	48, 278
Hin1II	CATG	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	48, 278
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	14, 45
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	2 cut(s)	7, 143
Hpy8I	GTNNAC	2 cut(s)	14, 45
HpyAV	CCTTC	2 cut(s)	51, 169
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	2 cut(s)	31, 79
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	2 cut(s)	61, 291
LweI	GCATC	3 cut(s)	18, 40, 190
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	112, 184, 288, 297
MluCI	AATT	2 cut(s)	51, 118
MnlI	CCTC	5 cut(s)	30, 85, 96, 106, 124
Mph1103I	ATGCAT	1 cut(s)	33
MseI	TTAA	1 cut(s)	195
MspI	CCGG	2 cut(s)	48, 278
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	123
NsiI	ATGCAT	1 cut(s)	33
NspV	TTCGAA	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	139
PmaCI	CACGTG	1 cut(s)	128
PmlI	CACGTG	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	128
PspCI	CACGTG	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	14
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	14
SetI	ASST	2 cut(s)	62, 130
SfaNI	GCATC	3 cut(s)	18, 40, 190
SfuI	TTCGAA	1 cut(s)	55
SgeI	CNNG	9 cut(s)	19, 33, 60, 75, 138, 140, 155, 286, 290
SinI	GGWCC	1 cut(s)	14
Sse9I	AATT	2 cut(s)	51, 118
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	44, 55
TaqII	GACCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	51, 118
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	1 cut(s)	51
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XmiI	GTMKAC	1 cut(s)	44
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.