Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

69355797 .. 69356825

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGAGTATCAAGGAAGAAATGAAATTAAGCTGGCCTCGGTTCAGAGGAACCTTGGCGCCTCACGGGCTAATTCCGCTACGTATAAAGGGTCGTTAGATCATGTGACGTTGAATAGTGCTACAGATGATGGTTATGCTTGGGACCTAACATTAGAGTTCTCGGCTGGAAATGTCTATGTTGGTAGCCCCAAGTTCAATGGCACCTCAACCTATCTTAGGCTTGGAATTGGTGGAAACATCAGGCTTCACACTTACTATGGCCAGGTGGAGGCCTTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

93

Amino Acids

10.11

Weight (kDa)

6.71

Isoelectric Point (pI)

18.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	56, 200
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	57
AfiI	CCNNNNNNNGG	2 cut(s)	216, 268
AgsI	TTSAA	2 cut(s)	112, 196
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
AoxI	GGCC	3 cut(s)	33, 259, 270
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	261
BanI	GGYRCC	2 cut(s)	56, 200
BccI	CCATC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	263
BfmI	CTRYAG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	60
BglI	GCCNNNNNGGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	4 cut(s)	50, 58, 143, 202
BmrFI	CCNGG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	81
BsaHI	GRCGYC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	36, 52, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 268
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	3 cut(s)	36, 52, 273
BseLI	CCNNNNNNNGG	2 cut(s)	216, 268
BshFI	GGCC	3 cut(s)	35, 261, 272
BshNI	GGYRCC	2 cut(s)	56, 200
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	216, 268
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	35, 261, 272
Bsp143I	GATC	1 cut(s)	97
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	3 cut(s)	35, 261, 272
BspLI	GGNNCC	4 cut(s)	50, 58, 143, 202
BspT107I	GGYRCC	2 cut(s)	56, 200
BssECI	CCNNGG	3 cut(s)	36, 52, 273
BssMI	GATC	1 cut(s)	97
BssNI	GRCGYC	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	52, 273
Bst2UI	CCWGG	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	57
BstBAI	YACGTR	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	215
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 74
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	120
BstSNI	TACGTA	1 cut(s)	81
BsuRI	GGCC	3 cut(s)	35, 261, 272
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	1 cut(s)	58
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
EaeI	YGGCCR	1 cut(s)	259
Eco105I	TACGTA	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	52, 273
Eco147I	AGGCCT	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	2 cut(s)	52, 273
EgeI	GGCGCC	1 cut(s)	58
EheI	GGCGCC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	52, 273
FaeI	CATG	1 cut(s)	104
FaiI	YATR	5 cut(s)	84, 102, 135, 177, 258
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	100
GlaI	GCGC	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	35, 261, 272
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	104
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	45
HpyCH4IV	ACGT	2 cut(s)	80, 107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 74
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	2 cut(s)	80, 107
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	104
HspAI	GCGC	1 cut(s)	57
KasI	GGCGCC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	97
LpnPI	CCDG	5 cut(s)	17, 150, 226, 248, 275
MaeII	ACGT	2 cut(s)	80, 107
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	1 cut(s)	27
MlsI	TGGCCA	1 cut(s)	261
MluCI	AATT	3 cut(s)	24, 70, 225
MluNI	TGGCCA	1 cut(s)	261
Mly113I	GGCGCC	1 cut(s)	57
MnlI	CCTC	5 cut(s)	39, 46, 70, 214, 262
Mox20I	TGGCCA	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	261
MseI	TTAA	1 cut(s)	27
Msp20I	TGGCCA	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	2 cut(s)	65, 74
NarI	GGCGCC	1 cut(s)	57
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	4 cut(s)	50, 58, 143, 202
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	103
PceI	AGGCCT	1 cut(s)	272
PluTI	GGCGCC	1 cut(s)	60
Ppu21I	YACGTR	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	4 cut(s)	50, 58, 143, 202
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	8 cut(s)	33, 54, 83, 110, 147, 206, 212, 267
SfcI	CTRYAG	1 cut(s)	120
SfoI	GGCGCC	1 cut(s)	58
SinI	GGWCC	1 cut(s)	142
SnaBI	TACGTA	1 cut(s)	81
Sse9I	AATT	3 cut(s)	24, 70, 225
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	1 cut(s)	75
SspDI	GGCGCC	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	2 cut(s)	52, 273
TaiI	ACGT	2 cut(s)	83, 110
TasI	AATT	3 cut(s)	24, 70, 225
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	142
XagI	CCTNNNNNAGG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.