pycom07g23740

Mitochondrial metalloendopeptidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
24570549 .. 24571151
603 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23740.2

Sequence Viewer

Length: 447 bp
ATGGCACTGCATGACGCTCTGGACCAGGGGAAGTGGTCCCGTGAGGATGAGATTCTTGATGATCAGTGGATTGAGAAGAGTAGGAAGACGAGTAGGGAGAGAGGTTTGAAAGCTGCCACTTCACATTTGGATCAATTGAATTGGGAGGTTTTGGTAGTGGATCGACCTGTTATGAATGCATTTTGCTTGCCGGGTGGGAAGATTGTCGTCTTCACGGGATTGCTCAAGCATTTTAGAAGTGATGCAGAGATAGCAACGATCATTGGTCATGAGGTTGGCCATGCTGTGGCTCGACATTCTGCAGAGACTATTACAAAGAGCCTGTGGTTTGCAATTTTGCAACTGGTACTTTATCGATTCATTACGCCTGATGTTTTCAACACAATGTCCAATCTTTTCTTGGGGCTTCCTTTCTCCCGAAGGTACATTACAGTTCTTTACAGTTGA

Protein Analysis

149

Amino Acids

16.91

Weight (kDa)

7.02

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000604)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G51740 AT5G51740 AT5G51740
fragaria_vesca FvH4_7g28431 FvH4_7g28432
malus_domestica MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 286
AclWI GGATC 2 cut(s) 138, 168
AcoI YGGCCR 1 cut(s) 277
AfaI GTAC 2 cut(s) 348, 425
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 3 cut(s) 109, 139, 379
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 299
AlwI GGATC 2 cut(s) 138, 168
AoxI GGCC 1 cut(s) 277
ApeKI GCWGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 22, 36
AsuC2I CCSGG 1 cut(s) 192
AvaII GGWCC 2 cut(s) 22, 36
BalI TGGCCA 1 cut(s) 279
BarI GAAGNNNNNNTAC 2 cut(s) 412, 444
BbsI GAAGAC 2 cut(s) 92, 202
BbvI GCAGC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 2 cut(s) 26, 192
Bme18I GGWCC 2 cut(s) 22, 36
BmgT120I GGNCC 2 cut(s) 22, 36
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 2 cut(s) 26, 192
BmsI GCATC 1 cut(s) 232
BpiI GAAGAC 2 cut(s) 92, 202
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 26
BseCI ATCGAT 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 1 cut(s) 52
BseLI CCNNNNNNNGG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 279
BshVI ATCGAT 1 cut(s) 355
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 22
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 279
Bsp143I GATC 4 cut(s) 61, 130, 160, 258
BspANI GGCC 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 355
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 304
BspPI GGATC 2 cut(s) 138, 168
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 4 cut(s) 61, 130, 160, 258
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 433, 443
Bst6I CTCTTC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 188
BstF5I GGATG 1 cut(s) 52
BstKTI GATC 4 cut(s) 64, 133, 163, 261
BstMAI GTCTC 1 cut(s) 299
BstMBI GATC 4 cut(s) 61, 130, 160, 258
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 2 cut(s) 24, 190
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 92, 202
Bsu15I ATCGAT 1 cut(s) 355
BsuRI GGCC 1 cut(s) 279
BsuTUI ATCGAT 1 cut(s) 355
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 5, 71
Cac8I GCNNGC 1 cut(s) 188
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 22, 36
ClaI ATCGAT 1 cut(s) 355
CseI GACGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 347, 424
CviAII CATG 3 cut(s) 11, 269, 281
CviJI RGCY 5 cut(s) 113, 279, 290, 321, 406
CviKI_1 RGCY 5 cut(s) 113, 279, 290, 321, 406
CviQI GTAC 2 cut(s) 347, 424
DpnI GATC 4 cut(s) 63, 132, 162, 260
DpnII GATC 4 cut(s) 61, 130, 160, 258
EaeI YGGCCR 1 cut(s) 277
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
Eco47I GGWCC 2 cut(s) 22, 36
EcoRII CCWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 3 cut(s) 14, 272, 284
FaiI YATR 4 cut(s) 12, 173, 270, 282
FaqI GGGAC 1 cut(s) 22
FatI CATG 3 cut(s) 10, 268, 280
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 114
GluI GCNGC 1 cut(s) 114
HaeIII GGCC 1 cut(s) 279
HapII CCGG 1 cut(s) 191
HgaI GACGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 14, 272, 284
HinfI GANTC 2 cut(s) 52, 357
HpaII CCGG 1 cut(s) 191
Hpy188III TCNNGA 4 cut(s) 20, 56, 269, 417
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 2 cut(s) 433, 443
HpyCH4V TGCA 6 cut(s) 10, 179, 245, 302, 332, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 3 cut(s) 14, 272, 284
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 4 cut(s) 61, 130, 160, 258
LpnPI CCDG 8 cut(s) 5, 11, 38, 180, 204, 329, 335, 381
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 1 cut(s) 232
MalI GATC 4 cut(s) 63, 132, 162, 260
MboI GATC 4 cut(s) 61, 130, 160, 258
MboII GAAGA 4 cut(s) 88, 97, 202, 211
MfeI CAATTG 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 279
MluCI AATT 3 cut(s) 134, 139, 333
MluNI TGGCCA 1 cut(s) 279
MnlI CCTC 4 cut(s) 37, 95, 139, 265
Mox20I TGGCCA 1 cut(s) 279
Mph1103I ATGCAT 1 cut(s) 181
MscI TGGCCA 1 cut(s) 279
Msp20I TGGCCA 1 cut(s) 279
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 2 cut(s) 26, 192
MunI CAATTG 1 cut(s) 134
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 251
NciI CCSGG 1 cut(s) 192
NdeII GATC 4 cut(s) 61, 130, 160, 258
NlaIII CATG 3 cut(s) 14, 272, 284
NlaIV GGNNCC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 181
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 2 cut(s) 52, 357
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 2 cut(s) 22, 36
PstI CTGCAG 1 cut(s) 304
RsaI GTAC 2 cut(s) 348, 425
RsaNI GTAC 2 cut(s) 347, 424
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 4 cut(s) 61, 130, 160, 258
Sau96I GGNCC 2 cut(s) 22, 36
ScrFI CCNGG 2 cut(s) 26, 192
SetI ASST 6 cut(s) 106, 115, 150, 169, 276, 425
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 2 cut(s) 22, 36
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 3 cut(s) 134, 139, 333
StyD4I CCNGG 2 cut(s) 24, 190
TaaI ACNGT 2 cut(s) 433, 443
TaqI TCGA 3 cut(s) 163, 292, 355
TasI AATT 3 cut(s) 134, 139, 333
TfiI GAWTC 2 cut(s) 52, 357
TscAI CASTG 2 cut(s) 12, 71
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 188, 349
TspRI CASTG 2 cut(s) 12, 71
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 22, 36
XcmI CCANNNNNNNNNTGG 2 cut(s) 124, 397
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.