Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

24736864 .. 24737319

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG219700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGTACTCTATGACTCAAAAGGTAAGTCCGTGTGGCAAAGTTTTGACTACCCTACTGACACTCTGTTAGTGGGACAGTCTCTACGGGCCGGAGGAGTAAACAAGCTCGTTAGCCGGGCCTCACGGGAAGGTTTACGAGGTGGTCTTTACAGCTTTATTTTGGAGCCCAAGGTATTGTTTTTGTACTATAAGAGCAACAACTCCCCAAAGCCATTGCTCTACTCTCAACTGATTACCATTCAGAAGGGGTCGCTAGATCATGTGAAGTTGAACAGCGCTACAGATGATGGTTATGTTTGGGACCTAACATTAGAGTCCTCGGCTAGAAATGCCTATGTTGGGGGGCCCAAGTTCAATGGCACCTTGACCTATCTTAGGCTTGGAATTGATGGAAACATCAGGCTTCACGCTTACCATGGCCAGGTAAATAAATGGGAGCAGACCTTCACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0006810 GO:0006833 GO:0008150 GO:0009505 GO:0012505 GO:0016020 GO:0030312 GO:0031090 GO:0042044 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0051179 GO:0051234 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 S_locus_glycop

Protein Analysis

151

Amino Acids

16.92

Weight (kDa)

9.4

Isoelectric Point (pI)

37.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	418
AfaI	GTAC	2 cut(s)	6, 185
AfeI	AGCGCT	1 cut(s)	277
AfiI	CCNNNNNNNGG	3 cut(s)	339, 375, 421
AgsI	TTSAA	2 cut(s)	271, 355
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	2 cut(s)	106, 153
AluI	AGCT	2 cut(s)	106, 153
Alw26I	GTCTC	1 cut(s)	84
Aor51HI	AGCGCT	1 cut(s)	277
AoxI	GGCC	4 cut(s)	87, 117, 344, 418
ApaI	GGGCCC	1 cut(s)	348
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	5 cut(s)	87, 117, 301, 344, 345
AsuC2I	CCSGG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	348
BalI	TGGCCA	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	2 cut(s)	168, 348
BccI	CCATC	2 cut(s)	281, 383
BciT130I	CCWGG	1 cut(s)	422
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	84
BfaI	CTAG	2 cut(s)	254, 324
BfmI	CTRYAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	116, 422
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	5 cut(s)	87, 117, 301, 344, 345
BmiI	GGNNCC	5 cut(s)	165, 302, 345, 346, 361
BmrFI	CCNGG	2 cut(s)	116, 422
BpuMI	CCSGG	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	168, 318, 415
Bsc4I	CCNNNNNNNGG	3 cut(s)	339, 375, 421
Bse3DI	GCAATG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	3 cut(s)	168, 318, 415
BseLI	CCNNNNNNNGG	3 cut(s)	339, 375, 421
BseMI	GCAATG	1 cut(s)	212
BseRI	GAGGAG	1 cut(s)	108
BseSI	GKGCMC	1 cut(s)	348
BshFI	GGCC	4 cut(s)	89, 119, 346, 420
BshNI	GGYRCC	1 cut(s)	359
BsiSI	CCGG	2 cut(s)	90, 115
BslFI	GGGAC	2 cut(s)	87, 314
BslI	CCNNNNNNNGG	3 cut(s)	339, 375, 421
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	87, 314
BsnI	GGCC	4 cut(s)	89, 119, 346, 420
Bsp120I	GGGCCC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	168, 348
Bsp143I	GATC	1 cut(s)	256
Bsp19I	CCATGG	1 cut(s)	415
BspANI	GGCC	4 cut(s)	89, 119, 346, 420
BspLI	GGNNCC	5 cut(s)	165, 302, 345, 346, 361
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	168, 318, 415
BssMI	GATC	1 cut(s)	256
BssT1I	CCWWGG	2 cut(s)	168, 415
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	374
BstDSI	CCRYGG	1 cut(s)	415
BstENI	CCTNNNNNAGG	1 cut(s)	373
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	2 cut(s)	114, 420
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	89, 119, 346, 420
BtgI	CCRYGG	1 cut(s)	415
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	5 cut(s)	87, 117, 301, 344, 345
Csp6I	GTAC	2 cut(s)	5, 184
CviAII	CATG	2 cut(s)	260, 416
CviQI	GTAC	2 cut(s)	5, 184
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	168, 415
Eco24I	GRGCYC	2 cut(s)	168, 348
Eco47I	GGWCC	1 cut(s)	301
Eco47III	AGCGCT	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	373
EcoO109I	RGGNCCY	2 cut(s)	301, 344
EcoRII	CCWGG	1 cut(s)	420
EcoT14I	CCWWGG	2 cut(s)	168, 415
EcoT38I	GRGCYC	2 cut(s)	168, 348
ErhI	CCWWGG	2 cut(s)	168, 415
FaeI	CATG	2 cut(s)	263, 419
FaiI	YATR	6 cut(s)	12, 189, 261, 294, 336, 417
FaqI	GGGAC	2 cut(s)	87, 314
FatI	CATG	2 cut(s)	259, 415
FriOI	GRGCYC	2 cut(s)	168, 348
FspBI	CTAG	2 cut(s)	254, 324
GlaI	GCGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	4 cut(s)	89, 119, 346, 420
HapII	CCGG	2 cut(s)	90, 115
HhaI	GCGC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	263, 419
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HinfI	GANTC	2 cut(s)	14, 314
HpaII	CCGG	2 cut(s)	90, 115
Hpy166II	GTNNAC	2 cut(s)	100, 134
Hpy188I	TCNGA	1 cut(s)	243
Hpy8I	GTNNAC	2 cut(s)	100, 134
HpyAV	CCTTC	3 cut(s)	122, 238, 454
HpyCH4III	ACNGT	1 cut(s)	78
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	263, 419
HspAI	GCGC	1 cut(s)	276
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	163, 436
LpnPI	CCDG	5 cut(s)	103, 128, 385, 407, 434
MaeI	CTAG	2 cut(s)	254, 324
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MhlI	GDGCHC	2 cut(s)	168, 348
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	420
MlyI	GAGTC	2 cut(s)	8, 323
MnlI	CCTC	4 cut(s)	86, 130, 131, 328
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
Msp20I	TGGCCA	1 cut(s)	420
MspI	CCGG	2 cut(s)	90, 115
MspR9I	CCNGG	2 cut(s)	116, 422
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	415
NdeII	GATC	1 cut(s)	256
NlaIII	CATG	2 cut(s)	263, 419
NlaIV	GGNNCC	5 cut(s)	165, 302, 345, 346, 361
NmeAIII	GCCGAG	1 cut(s)	299
PleI	GAGTC	2 cut(s)	8, 322
PpsI	GAGTC	2 cut(s)	8, 322
PpuMI	RGGWCCY	1 cut(s)	301
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	5 cut(s)	165, 302, 345, 346, 361
PspOMI	GGGCCC	1 cut(s)	344
PspPI	GGNCC	5 cut(s)	87, 117, 301, 344, 345
PspPPI	RGGWCCY	1 cut(s)	301
RsaI	GTAC	2 cut(s)	6, 185
RsaNI	GTAC	2 cut(s)	5, 184
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	5 cut(s)	87, 117, 301, 344, 345
SchI	GAGTC	2 cut(s)	8, 323
ScrFI	CCNGG	2 cut(s)	116, 422
SduI	GDGCHC	2 cut(s)	168, 348
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	301
Sse9I	AATT	1 cut(s)	384
SspMI	CTAG	2 cut(s)	254, 324
StyD4I	CCNGG	2 cut(s)	114, 420
StyI	CCWWGG	2 cut(s)	168, 415
TaaI	ACNGT	1 cut(s)	78
TasI	AATT	1 cut(s)	384
TatI	WGTACW	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	301
XagI	CCTNNNNNAGG	1 cut(s)	373
XspI	CTAG	2 cut(s)	254, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.