Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Forward (+)

49510662 .. 49512220

Gene Structure 1559 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGGAGAAGTTTCTAGGGGAACGGGACTGGGCTCCAGAGTCGCCACTTCGCATTTGGATTTTTTGAAGTGGGAGTTCTATGTAGAGGATGATCCTGATGTCAATGCAGCTTGCTTGGCTGGCGGCAAGATTTTGGTTTCCACAGGGTTGCTTAGGTTGGAACTGGAGGCAGATTACATTGGGCTGTTGTTGCTTGCTTCGGCCGGATATGATCCTAGGGTTGCTCTAGATGTGTGCCAGAAGTACAGCAAGCTTGTTGGTGAATCTCCAAACCAGAAAGATTATCTTTCTACCCATCCAACCGAGAAAAAGAGAGCTGAAAAGCTGGCTCAATCTCACGTCATGGAAGAAGCACTCTCTATATACAGGGATGTACAAGCTGGACGAGGGGCCGGGCAGGATAGGTTTTCTTCGAAGATGATCGATCCCTGTAACTTTACCTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

149

Amino Acids

16.37

Weight (kDa)

5.36

Isoelectric Point (pI)

28.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M48	PF01435	54 - 110	2.5e-06	Peptidase family M48

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	3 cut(s)	86, 206, 419
AcoI	YGGCCR	1 cut(s)	201
AfaI	GTAC	2 cut(s)	245, 375
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	340
AluBI	AGCT	5 cut(s)	110, 253, 317, 325, 380
AluI	AGCT	5 cut(s)	110, 253, 317, 325, 380
AlwI	GGATC	3 cut(s)	86, 206, 419
AoxI	GGCC	2 cut(s)	201, 390
ApeKI	GCWGC	1 cut(s)	107
AspA2I	CCTAGG	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	390
AsuC2I	CCSGG	1 cut(s)	394
AsuHPI	GGTGA	1 cut(s)	272
AsuII	TTCGAA	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	215
BanII	GRGCYC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	394
BfaI	CTAG	3 cut(s)	15, 216, 227
BisI	GCNGC	2 cut(s)	108, 124
BlnI	CCTAGG	1 cut(s)	215
BlsI	GCNGC	2 cut(s)	109, 125
Bme1390I	CCNGG	1 cut(s)	394
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	390
BmiI	GGNNCC	2 cut(s)	34, 391
BmrFI	CCNGG	1 cut(s)	394
BmrI	ACTGGG	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	38
BpmI	CTGGAG	2 cut(s)	19, 185
Bpu10I	CCTNAGC	1 cut(s)	152
Bpu14I	TTCGAA	1 cut(s)	413
BpuMI	CCSGG	1 cut(s)	394
Bsa29I	ATCGAT	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	215
Bse1I	ACTGG	2 cut(s)	33, 168
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	3 cut(s)	94, 295, 376
BseNI	ACTGG	2 cut(s)	33, 168
BseX3I	CGGCCG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	119
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	203, 392
BshVI	ATCGAT	1 cut(s)	423
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	204, 393
BslFI	GGGAC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	203, 392
Bsp119I	TTCGAA	1 cut(s)	413
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp1407I	TGTACA	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	91, 211, 420, 424
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	203, 392
BspDI	ATCGAT	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	34, 391
BspPI	GGATC	3 cut(s)	86, 206, 419
BspT104I	TTCGAA	1 cut(s)	413
BsrGI	TGTACA	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	33, 168
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	4 cut(s)	91, 211, 420, 424
BssT1I	CCWWGG	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	373
BstBI	TTCGAA	1 cut(s)	413
BstC8I	GCNNGC	5 cut(s)	112, 121, 195, 251, 327
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	3 cut(s)	94, 295, 376
BstKTI	GATC	4 cut(s)	94, 214, 423, 427
BstMBI	GATC	4 cut(s)	91, 211, 420, 424
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 120, 190
BstSCI	CCNGG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	119
BstZI	CGGCCG	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	203, 392
BsuTUI	ATCGAT	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	3 cut(s)	94, 295, 376
Cac8I	GCNNGC	5 cut(s)	112, 121, 195, 251, 327
Cfr13I	GGNCC	1 cut(s)	390
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	244, 374
CviAII	CATG	1 cut(s)	343
CviQI	GTAC	2 cut(s)	244, 374
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	4 cut(s)	93, 213, 422, 426
DpnII	GATC	4 cut(s)	91, 211, 420, 424
EaeI	YGGCCR	1 cut(s)	201
EagI	CGGCCG	1 cut(s)	201
EclXI	CGGCCG	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	35
Eco52I	CGGCCG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	215
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	1 cut(s)	346
FaiI	YATR	7 cut(s)	81, 210, 344, 362, 364, 446, 448
FalI	AAGNNNNNCTT	2 cut(s)	270, 302
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	1 cut(s)	342
Fnu4HI	GCNGC	2 cut(s)	108, 124
FokI	GGATG	3 cut(s)	101, 282, 383
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	108, 124
FspBI	CTAG	3 cut(s)	15, 216, 227
GluI	GCNGC	2 cut(s)	108, 124
GsuI	CTGGAG	2 cut(s)	19, 185
HaeIII	GGCC	2 cut(s)	203, 392
HapII	CCGG	2 cut(s)	204, 393
Hin1II	CATG	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	2 cut(s)	39, 263
HpaII	CCGG	2 cut(s)	204, 393
HphI	GGTGA	1 cut(s)	272
Hpy188III	TCNNGA	3 cut(s)	36, 95, 227
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 120, 190
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	91, 211, 420, 424
LmnI	GCTCC	1 cut(s)	38
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	3 cut(s)	15, 216, 227
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	431
MalI	GATC	4 cut(s)	93, 213, 422, 426
MboI	GATC	4 cut(s)	91, 211, 420, 424
MboII	GAAGA	3 cut(s)	359, 402, 427
MhlI	GDGCHC	1 cut(s)	35
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	2 cut(s)	138, 323
MnlI	CCTC	3 cut(s)	79, 160, 380
MspI	CCGG	2 cut(s)	204, 393
MspR9I	CCNGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	3 cut(s)	116, 120, 190
NciI	CCSGG	1 cut(s)	394
NdeII	GATC	4 cut(s)	91, 211, 420, 424
NlaIII	CATG	1 cut(s)	346
NlaIV	GGNNCC	2 cut(s)	34, 391
NspV	TTCGAA	1 cut(s)	413
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	109, 125
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PspN4I	GGNNCC	2 cut(s)	34, 391
PspPI	GGNCC	1 cut(s)	390
RsaI	GTAC	2 cut(s)	245, 375
RsaNI	GTAC	2 cut(s)	244, 374
SatI	GCNGC	2 cut(s)	108, 124
Sau3AI	GATC	4 cut(s)	91, 211, 420, 424
Sau96I	GGNCC	1 cut(s)	390
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	9 cut(s)	112, 158, 255, 319, 327, 342, 382, 407, 443
SfuI	TTCGAA	1 cut(s)	413
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	3 cut(s)	15, 216, 227
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	215
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	413, 423
TatI	WGTACW	2 cut(s)	243, 373
TauI	GCSGC	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	107
XbaI	TCTAGA	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	52
XmaJI	CCTAGG	1 cut(s)	215
XspI	CTAG	3 cut(s)	15, 216, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.