Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000604

Physical Location & Seq

Genomic Coordinates Reverse (-)

22498685 .. 22499146

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCAACGGTGGAGTTGGAAGCCGAGTTTAAGGGGAAGAATTGGCATCCTATGCACCTGGAAAGTGTGAGGGTTAGGCTGATTGCCAAGGATATTATTGATGCTTTGAAGAGAGGGTTGAGGCATGATCGGAGTGGACTGACATGGGAGATGCATCGGAGGAAGTCGACTGGAATTCGAAGGCCGGGGAGTAAGACTGTGCAGTCATTGATGGAGGGTGAGAAGAGGAAAATGGAGGGGAATTGGTCACGTGAGGATGAGATTCTTGATGATAAGTGGATTGAGCATAGTAGGAAGAAGGGTAAGGATAGTGGTGTTAAGGATGCCACTTCGCATTTGGTTGATTTGGATTGGGAGATTTTGTTGGTGGATGAACCGAATGTCATTGTGTTTTGCTTGCCGGGTGGGAAGATTGTGGTCTTCGTAGGGTTGCTCAAGCATTTTAGAAGTGATAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

153

Amino Acids

17.67

Weight (kDa)

8.91

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51740 AT5G51740 AT5G51740
fragaria_vesca	FvH4_7g28431 FvH4_7g28432
malus_domestica	MD01G1187900.v1.1 MD07G1015000.v1.1 MD07G1260500.v1.1
prunus_persica	Prupe.2G284300_v2.0.a1 Prupe.2G284400_v2.0.a1
pyrus_communis	pycom01g19990 pycom07g23380 pycom07g23540 pycom07g23740
rosa_chinensis	RchiOBHm_Chr1g0342951 RchiOBHm_Chr1g0375391 RchiOBHm_Chr1g0375401 RchiOBHm_Chr1g0375411 RchiOBHm_Chr2g0123811 RchiOBHm_Chr4g0391111 RchiOBHm_Chr4g0406741 RchiOBHm_Chr5g0031101 RchiOBHm_Chr7g0214411
rosa_laevigata	RLG00000004191 RLG00000019338 RLG00000026663 RLG00000026664
rosa_multiflora	Rmu_sc0000554.1_g000043 Rmu_sc0000554.1_g000047 Rmu_sc0001966.1_g000052 Rmu_sc0002169.1_g000012 Rmu_sc0006244.1_g000048 Rmu_sc0007176.1_g000002 Rmu_sc0014983.1_g000004 Rmu_sc0020175.1_g000003 Rmu_sc0021990.1_g000003 Rmu_ssc0000106.1_g000001
rosa_roxburghii	Rroxscaffold_1G00029630 Rroxscaffold_1G00049160 Rroxscaffold_3G00235470 Rroxscaffold_3G00235480 Rroxscaffold_4G00282790 Rroxscaffold_4G00282800 Rroxscaffold_5G00357450 Rroxscaffold_5G00360550
rosa_rugosa	Rorug01G0390800 Rorug01G0390800 Rorug06G0413000
rosa_samantha	Rh1AG177000 Rh1AG401300 Rh1AG401400 Rh1BG362700 Rh1BG363000 Rh1BG363100 Rh1BG366200 Rh1CG376300 Rh1CG378900 Rh1DG069900 Rh1DG393500 Rh1DG393800 Rh1DG393900 Rh1DG396800 Rh2AG166900 Rh2DG172200 Rh2DG463600 Rh3CG274900 Rh4BG226700 Rh5AG215800 Rh5AG215900 Rh5BG215300 Rh5CG238800 Rh5DG219700 Rh5DG219800 Rh6BG136300 Rh6CG134700 Rh6DG121000 Rh7CG183600 Rh7DG190700
rosa_wichuraiana	Rw1G035620 Rw1G035630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	202
AccI	GTMKAC	1 cut(s)	167
AcsI	RAATTY	1 cut(s)	174
AcvI	CACGTG	1 cut(s)	251
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	57
AoxI	GGCC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	174
AsuC2I	CCSGG	2 cut(s)	186, 402
AsuHPI	GGTGA	1 cut(s)	230
AsuII	TTCGAA	1 cut(s)	178
BbrPI	CACGTG	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	412
BccI	CCATC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	59
BcnI	CCSGG	2 cut(s)	186, 402
Bme1390I	CCNGG	3 cut(s)	59, 186, 402
BmrFI	CCNGG	3 cut(s)	59, 186, 402
BmsI	GCATC	5 cut(s)	55, 91, 141, 163, 313
BpiI	GAAGAC	1 cut(s)	412
Bpu14I	TTCGAA	1 cut(s)	178
BpuEI	CTTGAG	1 cut(s)	419
BpuMI	CCSGG	2 cut(s)	186, 402
BsaAI	YACGTR	1 cut(s)	251
BsaJI	CCNNGG	2 cut(s)	87, 185
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bse1I	ACTGG	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	87, 185
BseGI	GGATG	4 cut(s)	46, 262, 328, 376
BseNI	ACTGG	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	221
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	185, 401
BsnI	GGCC	1 cut(s)	184
Bsp119I	TTCGAA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	87, 185
BssMI	GATC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	10, 199
Bst6I	CTCTTC	2 cut(s)	104, 218
BstAPI	GCANNNNNTGC	1 cut(s)	52
BstBAI	YACGTR	1 cut(s)	251
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	398
BstF5I	GGATG	4 cut(s)	46, 262, 328, 376
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	3 cut(s)	57, 184, 400
BstV2I	GAAGAC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	184
BtsCI	GGATG	4 cut(s)	46, 262, 328, 376
Cac8I	GCNNGC	1 cut(s)	398
CviAII	CATG	2 cut(s)	125, 144
CviJI	RGCY	3 cut(s)	23, 79, 184
CviKI_1	RGCY	3 cut(s)	23, 79, 184
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
DrdI	GACNNNNNNGTC	1 cut(s)	202
DseDI	GACNNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	104, 218
EarI	CTCTTC	2 cut(s)	104, 218
Eco130I	CCWWGG	1 cut(s)	87
Eco72I	CACGTG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	128, 147
FaiI	YATR	4 cut(s)	53, 126, 145, 288
FatI	CATG	2 cut(s)	124, 143
FblI	GTMKAC	1 cut(s)	167
FokI	GGATG	4 cut(s)	33, 269, 335, 383
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	2 cut(s)	185, 401
Hin1II	CATG	2 cut(s)	128, 147
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	2 cut(s)	185, 401
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	137, 168
Hpy188I	TCNGA	2 cut(s)	132, 159
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	137, 168
HpyAV	CCTTC	2 cut(s)	174, 292
HpyCH4III	ACNGT	2 cut(s)	10, 199
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	3 cut(s)	55, 154, 202
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	128, 147
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	5 cut(s)	44, 71, 156, 198, 414
LweI	GCATC	5 cut(s)	55, 91, 141, 163, 313
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	6 cut(s)	49, 121, 235, 307, 412, 421
MluCI	AATT	4 cut(s)	40, 174, 241, 454
MnlI	CCTC	8 cut(s)	63, 107, 114, 153, 208, 219, 229, 247
Mph1103I	ATGCAT	1 cut(s)	156
MseI	TTAA	2 cut(s)	30, 318
MspI	CCGG	2 cut(s)	185, 401
MspR9I	CCNGG	3 cut(s)	59, 186, 402
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	2 cut(s)	186, 402
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	128, 147
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	246
NsiI	ATGCAT	1 cut(s)	156
NspV	TTCGAA	1 cut(s)	178
PfeI	GAWTC	1 cut(s)	262
PmaCI	CACGTG	1 cut(s)	251
PmlI	CACGTG	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	57
PspCI	CACGTG	1 cut(s)	251
PspGI	CCWGG	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	30, 318
Sau3AI	GATC	1 cut(s)	127
ScrFI	CCNGG	3 cut(s)	59, 186, 402
SetI	ASST	2 cut(s)	60, 253
SfaNI	GCATC	5 cut(s)	55, 91, 141, 163, 313
SfuI	TTCGAA	1 cut(s)	178
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	4 cut(s)	40, 174, 241, 454
StyD4I	CCNGG	3 cut(s)	57, 184, 400
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	10, 199
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	167, 178
TasI	AATT	4 cut(s)	40, 174, 241, 454
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	2 cut(s)	30, 318
Tru9I	TTAA	2 cut(s)	30, 318
TseFI	GTSAC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	387
XapI	RAATTY	1 cut(s)	174
XcmI	CCANNNNNNNNNTGG	1 cut(s)	334
XmiI	GTMKAC	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.