MD10G1074700.v1.1

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000891
Physical Location & Seq
Reverse (-)
10579732 .. 10581019
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1074700.v1.1.491

Sequence Viewer

Length: 396 bp
ATGCCAACAGATGATTGTTTTAAGGTCGTTAAAGAAGATATGAAGCGAAGGTTAAAGAACACTAATATGAAGCCTCTGAGTCACTCATCATACTTAAGACTGCAAGTTCTGTGTCAAATTTTTTATGATGCAGATGAGAAGTTGCATGTTTTGGATGAATTGTCTATTTCTGATTTGAAGTCATTCATTCCCGAGCTTTGTTCCCAGATACACTACACAAATGTACCTATATTTGTTATAGGTTACTACTATCAATTTGTAAAACTCAAGTTCTTAACATCATCCTCCAGCCGGGTATATTTTCAAGAGAAATCCATGCGGTTCAGGCTTCTTGACCTCATATTCTTTCACTTTGACATCTATACATTGGGGGCCTTTGCCATGGAAATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

132

Amino Acids

15.61

Weight (kDa)

7.67

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 319
AcsI RAATTY 2 cut(s) 117, 387
AfaI GTAC 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 291
AflII CTTAAG 1 cut(s) 94
AgsI TTSAA 2 cut(s) 178, 305
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 372
ApoI RAATTY 2 cut(s) 117, 387
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 372
AsuC2I CCSGG 1 cut(s) 293
AvaI CYCGRG 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BcnI CCSGG 1 cut(s) 293
BfrI CTTAAG 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 373
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 381
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 381
BseGI GGATG 2 cut(s) 160, 281
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 374
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 291
BsnI GGCC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 191
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 1 cut(s) 319
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 373
BspTI CTTAAG 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 381
BssT1I CCWWGG 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 160, 281
BstMWI GCNNNNNNNGC 1 cut(s) 325
BstNSI RCATGY 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 291
BsuRI GGCC 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 160, 281
Cfr13I GGNCC 1 cut(s) 372
Csp6I GTAC 1 cut(s) 224
CviAII CATG 3 cut(s) 146, 316, 382
CviJI RGCY 5 cut(s) 73, 196, 291, 328, 374
CviKI_1 RGCY 5 cut(s) 73, 196, 291, 328, 374
CviQI GTAC 1 cut(s) 224
DdeI CTNAG 1 cut(s) 77
Eco130I CCWWGG 1 cut(s) 381
Eco88I CYCGRG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 3 cut(s) 149, 319, 385
FatI CATG 3 cut(s) 145, 315, 381
FokI GGATG 2 cut(s) 167, 268
GsuI CTGGAG 1 cut(s) 271
HaeIII GGCC 1 cut(s) 374
HapII CCGG 1 cut(s) 292
Hin1II CATG 3 cut(s) 149, 319, 385
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 292
Hpy188I TCNGA 2 cut(s) 78, 172
Hpy188III TCNNGA 3 cut(s) 191, 305, 332
HpyAV CCTTC 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 103, 131, 145
HpyF10VI GCNNNNNNNGC 1 cut(s) 325
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 3 cut(s) 149, 319, 385
LpnPI CCDG 4 cut(s) 218, 301, 305, 310
LweI GCATC 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 80, 242
MboII GAAGA 1 cut(s) 47
MluCI AATT 4 cut(s) 117, 158, 254, 387
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 3 cut(s) 84, 295, 347
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 5 cut(s) 21, 30, 53, 95, 275
MslI CAYNNNNRTG 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 94
MspI CCGG 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 293
MwoI GCNNNNNNNGC 1 cut(s) 325
NciI CCSGG 1 cut(s) 293
NcoI CCATGG 1 cut(s) 381
NlaIII CATG 3 cut(s) 149, 319, 385
NlaIV GGNNCC 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 182
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 373
PspPI GGNCC 1 cut(s) 372
RsaI GTAC 1 cut(s) 225
RsaNI GTAC 1 cut(s) 224
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 5 cut(s) 21, 30, 53, 95, 275
Sau96I GGNCC 1 cut(s) 372
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 293
SetI ASST 6 cut(s) 27, 53, 198, 229, 244, 339
SfaNI GCATC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 2 cut(s) 94, 266
SmoI CTYRAG 2 cut(s) 94, 266
Sse9I AATT 4 cut(s) 117, 158, 254, 387
SsiI CCGC 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 381
TasI AATT 4 cut(s) 117, 158, 254, 387
Tru1I TTAA 5 cut(s) 21, 30, 53, 95, 275
Tru9I TTAA 5 cut(s) 21, 30, 53, 95, 275
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 4 cut(s) 56, 83, 171, 175
Vha464I CTTAAG 1 cut(s) 94
XapI RAATTY 2 cut(s) 117, 387
XceI RCATGY 1 cut(s) 149
XmnI GAANNNNTTC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.