Rh3BG342600

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000891
Physical Location & Seq
Forward (+)
36813054 .. 36862633
49580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG342600.1

Sequence Viewer

Length: 585 bp
ATGAGGGTTGAACTTGTAACGGATTGTGGTTCTGGAATTGGGAGGATCACAAAACATCTTCTCATAAGATACTTCAATGAGGCCAGTTTTGCCCTGCTGGATACTTCTTTGTATGTGAATAATTACTATCTGGAACTGAAGCTGTGGGACTTCAATGATAAGCTTCCAGCTGTATTGTCAACAATTTTGACAACAGCCAAAAATTTCCTGCCAACTTATGATTGTTTCAAGGTTATTAAAGAAAATATGGAACGTCTGATAAAGAACACTAATATGAAGCCTCTGAGTCATGCTGAATACTTGAAACTGCAAGTTTTGTACCAGAGATTCTACGATGTAGATGACCAGTTGCATGTTTTAAATGGATTGTCTGTTTCTGATGTGAAGTCGTTTATTCCAGTGCTTTGGTCCCAGTTTGTATCATTGCCTCCTTTCTTCAGAGCTGTAGTATCATCGCGTCCTGCTGGTTCTATTCACCCAGATGCAGTAGCTTTCTTTTCTCCAGAAGAGATATGGAATCATAGCAAATCTAGAGGGATTGAGATGAAGTCAGGAATTTATTTTGCGATGCAATCTGGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

194

Amino Acids

22.25

Weight (kDa)

7.77

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 16 - 118 1.3e-16 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 457
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 202, 555
AcuI CTGAAG 2 cut(s) 158, 421
AfaI GTAC 1 cut(s) 320
AgsI TTSAA 5 cut(s) 11, 76, 154, 229, 304
AluBI AGCT 5 cut(s) 142, 163, 170, 443, 491
AluI AGCT 5 cut(s) 142, 163, 170, 443, 491
AlwI GGATC 1 cut(s) 53
AoxI GGCC 1 cut(s) 81
ApoI RAATTY 2 cut(s) 202, 555
AspS9I GGNCC 1 cut(s) 408
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 408
BciVI GTATCC 1 cut(s) 94
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 408
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 410
BmrI ACTGGG 1 cut(s) 406
BmsI GCATC 2 cut(s) 472, 558
BmuI ACTGGG 1 cut(s) 406
BpmI CTGGAG 1 cut(s) 486
Bse1I ACTGG 4 cut(s) 84, 346, 398, 412
Bse3DI GCAATG 1 cut(s) 422
BseMI GCAATG 1 cut(s) 422
BseMII CTCAG 1 cut(s) 275
BseNI ACTGG 4 cut(s) 84, 346, 398, 412
Bsh1236I CGCG 1 cut(s) 457
BshFI GGCC 1 cut(s) 83
BslFI GGGAC 2 cut(s) 161, 394
BsmFI GGGAC 2 cut(s) 161, 394
BsnI GGCC 1 cut(s) 83
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 276
BspFNI CGCG 1 cut(s) 457
BspLI GGNNCC 1 cut(s) 410
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 422
BsrI ACTGG 4 cut(s) 84, 346, 398, 412
BssMI GATC 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 284
BstFNI CGCG 1 cut(s) 457
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 1 cut(s) 457
BstXI CCANNNNNNTGG 1 cut(s) 405
BsuI GTATCC 1 cut(s) 94
BsuRI GGCC 1 cut(s) 83
BtgZI GCGATG 2 cut(s) 438, 581
BtsIMutI CAGTG 1 cut(s) 405
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 290, 353
CviJI RGCY 8 cut(s) 83, 142, 163, 170, 197, 280, 443, 491
CviKI_1 RGCY 8 cut(s) 83, 142, 163, 170, 197, 280, 443, 491
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 284
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 2 cut(s) 158, 421
FaeI CATG 2 cut(s) 293, 356
FaiI YATR 9 cut(s) 65, 114, 219, 248, 275, 291, 354, 514, 522
FaqI GGGAC 2 cut(s) 161, 394
FatI CATG 2 cut(s) 289, 352
FspBI CTAG 1 cut(s) 531
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 1 cut(s) 83
HgaI GACGC 1 cut(s) 446
Hin1II CATG 2 cut(s) 293, 356
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 3 cut(s) 286, 327, 517
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 4 cut(s) 258, 285, 379, 440
Hpy188III TCNNGA 5 cut(s) 33, 131, 503, 531, 552
Hpy8I GTNNAC 1 cut(s) 180
HpyCH4IV ACGT 1 cut(s) 253
HpyCH4V TGCA 4 cut(s) 310, 352, 485, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 1 cut(s) 253
Hsp92II CATG 2 cut(s) 293, 356
Kzo9I GATC 1 cut(s) 45
LweI GCATC 2 cut(s) 472, 558
MaeI CTAG 1 cut(s) 531
MaeII ACGT 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 16
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 3 cut(s) 50, 427, 518
MluCI AATT 6 cut(s) 36, 121, 183, 202, 555, 580
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 5 cut(s) 36, 73, 291, 438, 527
MseI TTAA 2 cut(s) 237, 359
MslI CAYNNNNRTG 2 cut(s) 272, 480
MspA1I CMGCKG 1 cut(s) 170
MvnI CGCG 1 cut(s) 457
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 1 cut(s) 45
NlaIII CATG 2 cut(s) 293, 356
NlaIV GGNNCC 1 cut(s) 410
NspI RCATGY 1 cut(s) 356
PfeI GAWTC 2 cut(s) 327, 517
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 410
PspPI GGNCC 1 cut(s) 408
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
RseI CAYNNNNRTG 2 cut(s) 272, 480
SaqAI TTAA 2 cut(s) 237, 359
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 408
SchI GAGTC 1 cut(s) 295
SetI ASST 7 cut(s) 144, 165, 172, 234, 256, 445, 493
SfaNI GCATC 2 cut(s) 472, 558
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 1 cut(s) 408
SmiMI CAYNNNNRTG 2 cut(s) 272, 480
Sse9I AATT 6 cut(s) 36, 121, 183, 202, 555, 580
SspMI CTAG 1 cut(s) 531
TaiI ACGT 1 cut(s) 256
TasI AATT 6 cut(s) 36, 121, 183, 202, 555, 580
TfiI GAWTC 2 cut(s) 327, 517
Tru1I TTAA 2 cut(s) 237, 359
Tru9I TTAA 2 cut(s) 237, 359
TscAI CASTG 1 cut(s) 405
TspDTI ATGAA 2 cut(s) 290, 560
TspGWI ACGGA 1 cut(s) 35
TspRI CASTG 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 408
XapI RAATTY 2 cut(s) 202, 555
XbaI TCTAGA 1 cut(s) 530
XceI RCATGY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 510
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.