Rmu_sc0007177.1_g000010

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007177.1
Physical Location & Seq
Reverse (-)
70131 .. 71324
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007177.1_g000010.1.cds

Sequence Viewer

Length: 447 bp
atgatattcttgcatcacaattggagcatgattgaacctccagggtccaccccaaacgactttgttatgatcttgcagtacgtcaaaagccaacacaaatttgttgtgctcaagctcttggatcttgaagcctttgtcaagaacccacacccttctaaaaacttgtctcaagtcattcaactaagccgcctcactgcattgctagttcacgatcctgagattggacaatcccaactctccgagggctctgaggaagacgacgatagtgaaggagaggatgaagatgaactgaataagaaaaagggaggggattctcggactaacaaggcatcagcagcaatgtgtgtagcaataggcagcttctctgaccctcctgaggcacaggggattgcacactttctaggtctgtgttataagtgtgcatatgctcaaccaaagcgtggttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

148

Amino Acids

16.35

Weight (kDa)

5.28

Isoelectric Point (pI)

50.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 414
AccB7I CCANNNNNTGG 1 cut(s) 440
AciI CCGC 1 cut(s) 187
AclWI GGATC 2 cut(s) 129, 206
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 3 cut(s) 221, 376, 440
AgsI TTSAA 3 cut(s) 35, 128, 179
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 2 cut(s) 115, 360
AluI AGCT 2 cut(s) 115, 360
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 2 cut(s) 129, 206
ApeKI GCWGC 2 cut(s) 335, 357
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 45
AvaII GGWCC 1 cut(s) 45
AxyI CCTNAGG 1 cut(s) 375
BanII GRGCYC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 2 cut(s) 347, 369
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 2 cut(s) 203, 401
BisI GCNGC 3 cut(s) 187, 336, 358
BlsI GCNGC 3 cut(s) 188, 337, 359
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 42
BmsI GCATC 2 cut(s) 22, 338
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 95, 153
BsaJI CCNNGG 2 cut(s) 41, 240
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 376, 440
Bse21I CCTNAGG 1 cut(s) 375
Bse3DI GCAATG 2 cut(s) 197, 345
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 41, 240
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 3 cut(s) 221, 376, 440
BseMI GCAATG 2 cut(s) 197, 345
BseMII CTCAG 3 cut(s) 207, 240, 366
BseXI GCAGC 2 cut(s) 347, 369
BsiHKAI GWGCWC 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 221, 376, 440
BsmAI GTCTC 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 111, 248
Bsp143I GATC 3 cut(s) 69, 121, 211
BspACI CCGC 1 cut(s) 187
BspCNI CTCAG 3 cut(s) 208, 241, 367
BspLI GGNNCC 1 cut(s) 46
BspPI GGATC 2 cut(s) 129, 206
BsrDI GCAATG 2 cut(s) 197, 345
BssECI CCNNGG 2 cut(s) 41, 240
BssMI GATC 3 cut(s) 69, 121, 211
Bst2UI CCWGG 1 cut(s) 42
BstDEI CTNAG 4 cut(s) 182, 216, 249, 375
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 3 cut(s) 72, 124, 214
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 3 cut(s) 69, 121, 211
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 347, 369
BstV2I GAAGAC 1 cut(s) 261
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
Bsu36I CCTNAGG 1 cut(s) 375
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 79
CviAII CATG 1 cut(s) 28
CviJI RGCY 6 cut(s) 90, 115, 131, 186, 246, 360
CviKI_1 RGCY 6 cut(s) 90, 115, 131, 186, 246, 360
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 4 cut(s) 182, 216, 249, 375
DpnI GATC 3 cut(s) 71, 123, 213
DpnII GATC 3 cut(s) 69, 121, 211
Eco24I GRGCYC 1 cut(s) 248
Eco47I GGWCC 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 248
FaeI CATG 1 cut(s) 31
FaiI YATR 5 cut(s) 29, 68, 414, 424, 426
FatI CATG 1 cut(s) 27
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 187, 336, 358
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 248
Fsp4HI GCNGC 3 cut(s) 187, 336, 358
FspBI CTAG 2 cut(s) 203, 401
GluI GCNGC 3 cut(s) 187, 336, 358
GsuI CTGGAG 1 cut(s) 24
Hin1II CATG 1 cut(s) 31
HinfI GANTC 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 48, 208
Hpy188I TCNGA 4 cut(s) 241, 250, 318, 367
Hpy188III TCNNGA 5 cut(s) 125, 139, 209, 215, 374
Hpy8I GTNNAC 2 cut(s) 48, 208
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 162, 263
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 5 cut(s) 13, 76, 197, 392, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 4 cut(s) 182, 216, 249, 375
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 3 cut(s) 69, 121, 211
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 5 cut(s) 27, 54, 228, 368, 387
Lsp1109I GCAGC 2 cut(s) 347, 369
LweI GCATC 2 cut(s) 22, 338
MaeI CTAG 2 cut(s) 203, 401
MaeII ACGT 1 cut(s) 81
MalI GATC 3 cut(s) 71, 123, 213
MboI GATC 3 cut(s) 69, 121, 211
MboII GAAGA 2 cut(s) 266, 293
MfeI CAATTG 1 cut(s) 19
MflI RGATCY 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 111, 248
MluCI AATT 2 cut(s) 19, 98
MnlI CCTC 8 cut(s) 48, 200, 235, 244, 268, 299, 370, 381
MseI TTAA 1 cut(s) 445
MspR9I CCNGG 1 cut(s) 42
MunI CAATTG 1 cut(s) 19
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeI CATATG 1 cut(s) 424
NdeII GATC 3 cut(s) 69, 121, 211
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 46
PfeI GAWTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 3 cut(s) 188, 337, 359
PsiI TTATAA 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 40
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 45
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
SaqAI TTAA 1 cut(s) 445
SatI GCNGC 3 cut(s) 187, 336, 358
Sau3AI GATC 3 cut(s) 69, 121, 211
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 2 cut(s) 111, 248
SetI ASST 5 cut(s) 40, 84, 117, 362, 406
SfaNI GCATC 2 cut(s) 22, 338
SinI GGWCC 1 cut(s) 45
SmlI CTYRAG 2 cut(s) 110, 168
SmoI CTYRAG 2 cut(s) 110, 168
Sse9I AATT 2 cut(s) 19, 98
SsiI CCGC 1 cut(s) 187
SspMI CTAG 2 cut(s) 203, 401
StyD4I CCNGG 1 cut(s) 40
TaiI ACGT 1 cut(s) 84
TasI AATT 2 cut(s) 19, 98
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 1 cut(s) 445
Tru9I TTAA 1 cut(s) 445
TscAI CASTG 1 cut(s) 199
TseI GCWGC 2 cut(s) 335, 357
TspDTI ATGAA 2 cut(s) 294, 300
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 1 cut(s) 98
XspI CTAG 2 cut(s) 203, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.