RchiOBHm_Chr1g0369151

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000891
Physical Location & Seq
Reverse (-)
59066881 .. 59070617
3737 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59340

Sequence Viewer

Length: 318 bp
ATGGCTCTGACACCTTCTTCCACCAAATCCAATCAAAACCCTAGCCAAAACCCCATAATCCCCCCCCCATCGACTGTAGTTCTTAAAAGCCCATGCATCTTCAAACCCCAACTTAACCCTAAAAGAGTCTTCGTCGGAGCACTCGGTGGAAGTCTTCGCTCGAATTTGGGTCTGGGCGTAACACTCACTGGTCTTTTTCTGGAACTCAAGCAGGTGTTTTCTGGAACTCGAGCAGGCAATAAAAAGAGCTTGAGTGATGCCATGGAAGAAGGGATCAACTTGTGGGAACAAATATTGAAACTGTACAGAGATTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

105

Amino Acids

11.42

Weight (kDa)

9.84

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 1 cut(s) 163
AdeI CACNNNGTG 1 cut(s) 146
AfaI GTAC 1 cut(s) 305
AgsI TTSAA 2 cut(s) 103, 298
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
Alw21I GWGCWC 1 cut(s) 142
AlwI GGATC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 228
ApoI RAATTY 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 228
BbsI GAAGAC 2 cut(s) 121, 146
Bbv12I GWGCWC 1 cut(s) 142
BccI CCATC 1 cut(s) 76
BfaI CTAG 1 cut(s) 42
BfmI CTRYAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 202
BmeT110I CYCGRG 1 cut(s) 228
BmsI GCATC 2 cut(s) 105, 247
BpiI GAAGAC 2 cut(s) 121, 146
BpuEI CTTGAG 2 cut(s) 191, 271
BsaJI CCNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 193
BseDI CCNNGG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 142
BsiHKCI CYCGRG 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 142
Bsp1407I TGTACA 1 cut(s) 303
Bsp143I GATC 1 cut(s) 273
Bsp19I CCATGG 1 cut(s) 261
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 1 cut(s) 281
BsrGI TGTACA 1 cut(s) 303
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 273
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 76, 303
BstAUI TGTACA 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 235
BstDSI CCRYGG 1 cut(s) 261
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 75
BstV2I GAAGAC 2 cut(s) 121, 146
BtgI CCRYGG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 304
CviAII CATG 2 cut(s) 93, 262
CviJI RGCY 4 cut(s) 5, 45, 90, 249
CviKI_1 RGCY 4 cut(s) 5, 45, 90, 249
CviQI GTAC 1 cut(s) 304
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 261
EcoT22I ATGCAT 1 cut(s) 98
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 96, 265
FaiI YATR 3 cut(s) 56, 94, 263
FatI CATG 2 cut(s) 92, 261
FspBI CTAG 1 cut(s) 42
Hin1II CATG 2 cut(s) 96, 265
HinfI GANTC 1 cut(s) 126
Hpy188I TCNGA 2 cut(s) 9, 137
Hpy188III TCNNGA 2 cut(s) 200, 222
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 24, 263
HpyCH4III ACNGT 2 cut(s) 76, 303
HpyCH4V TGCA 1 cut(s) 96
Hsp92II CATG 2 cut(s) 96, 265
Kzo9I GATC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 6 cut(s) 158, 174, 185, 197, 207, 219
LweI GCATC 2 cut(s) 105, 247
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 178
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 5 cut(s) 9, 91, 121, 146, 278
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 1 cut(s) 163
MlyI GAGTC 1 cut(s) 135
MmeI TCCRAC 1 cut(s) 115
Mph1103I ATGCAT 1 cut(s) 98
MseI TTAA 2 cut(s) 84, 114
NcoI CCATGG 1 cut(s) 261
NdeII GATC 1 cut(s) 273
NlaIII CATG 2 cut(s) 96, 265
NsiI ATGCAT 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 228
PaqCI CACCTGC 1 cut(s) 202
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
PspXI VCTCGAGB 1 cut(s) 228
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 2 cut(s) 84, 114
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 1 cut(s) 135
SduI GDGCHC 1 cut(s) 142
SetI ASST 3 cut(s) 16, 216, 251
SfaNI GCATC 2 cut(s) 105, 247
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 228
SlaI CTCGAG 1 cut(s) 228
SmlI CTYRAG 3 cut(s) 206, 228, 250
SmoI CTYRAG 3 cut(s) 206, 228, 250
Sse9I AATT 1 cut(s) 163
SspI AATATT 1 cut(s) 294
SspMI CTAG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 76, 303
TaqI TCGA 3 cut(s) 71, 161, 229
TasI AATT 1 cut(s) 163
TatI WGTACW 1 cut(s) 303
Tru1I TTAA 2 cut(s) 84, 114
Tru9I TTAA 2 cut(s) 84, 114
TscAI CASTG 1 cut(s) 193
TspRI CASTG 1 cut(s) 193
XapI RAATTY 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 228
XspI CTAG 1 cut(s) 42
Zsp2I ATGCAT 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.