RLG00000029400

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
38119525 .. 38120759
1235 bp
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UTR
Exon/CDS
Intron
RLM00000029400

Sequence Viewer

Length: 402 bp
ATGAAGCCTCTGAGCCACTCTACATACTTGAGAGTGCAAGTTTTGTTCCAGAGATTCTATGATGTTGGTGAGAAGTTGCATGTTTTAAGTGGACTTTCTATTTCTGATGTGAAGTCATTTATTCCTCAGCTTTGGTCCAAGCTATATTTTCAAATTGAGCGGGAATTGAGGATCGAGTCCCCCAGATTGAGAGCCCTGATAGATCTTTTCAATGAAATTGTGGAGGAACCACTTTTCAATCAGCTAAGTCTTACGATTGCCCTTGTACTTCTGGAAATAGGACAAAAGGGCAACTTGGTTATACTATTCATTGTGGCCCGTGGGTTACTTGCAATACATTTGGATTTTATTTTTGCGTTCAATCAGTTGACAACCCGATCTACTTGCGGAGGAGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

134

Amino Acids

15.25

Weight (kDa)

6.83

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 160
AciI CCGC 2 cut(s) 160, 387
AclWI GGATC 1 cut(s) 179
AfaI GTAC 1 cut(s) 267
AgsI TTSAA 4 cut(s) 152, 211, 238, 361
AluBI AGCT 3 cut(s) 130, 142, 244
AluI AGCT 3 cut(s) 130, 142, 244
AlwI GGATC 1 cut(s) 179
AoxI GGCC 1 cut(s) 315
AspS9I GGNCC 2 cut(s) 135, 316
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 196
BbvCI CCTCAGC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BglII AGATCT 1 cut(s) 202
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 135, 316
BmiI GGNNCC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 319
BseMII CTCAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 317
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 171, 202, 377
BspACI CCGC 2 cut(s) 160, 387
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 3 cut(s) 171, 202, 377
BstDEI CTNAG 3 cut(s) 11, 126, 245
BstDSI CCRYGG 1 cut(s) 319
BstKTI GATC 3 cut(s) 174, 205, 380
BstMBI GATC 3 cut(s) 171, 202, 377
BstNSI RCATGY 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 317
BtgI CCRYGG 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 135, 316
Csp6I GTAC 1 cut(s) 266
CviAII CATG 1 cut(s) 80
CviJI RGCY 7 cut(s) 7, 15, 130, 142, 194, 244, 317
CviKI_1 RGCY 7 cut(s) 7, 15, 130, 142, 194, 244, 317
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 3 cut(s) 11, 126, 245
DpnI GATC 3 cut(s) 173, 204, 379
DpnII GATC 3 cut(s) 171, 202, 377
Eco24I GRGCYC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 196
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 25, 60, 81, 145, 302
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 317
Hin1II CATG 1 cut(s) 83
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HinfI GANTC 2 cut(s) 54, 176
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 92, 369
Hpy188I TCNGA 2 cut(s) 12, 106
Hpy188III TCNNGA 2 cut(s) 49, 272
Hpy8I GTNNAC 2 cut(s) 92, 369
HpyCH4V TGCA 3 cut(s) 37, 79, 332
HpyF3I CTNAG 3 cut(s) 11, 126, 245
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 3 cut(s) 171, 202, 377
LpnPI CCDG 4 cut(s) 62, 196, 209, 257
MaeIII GTNAC 1 cut(s) 324
MalI GATC 3 cut(s) 173, 204, 379
MbiI CCGCTC 1 cut(s) 160
MboI GATC 3 cut(s) 171, 202, 377
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 3 cut(s) 153, 164, 216
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 5 cut(s) 18, 135, 162, 217, 383
MseI TTAA 1 cut(s) 86
NdeII GATC 3 cut(s) 171, 202, 377
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 228
NspI RCATGY 1 cut(s) 83
PfeI GAWTC 1 cut(s) 54
PleI GAGTC 1 cut(s) 184
PpsI GAGTC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 135, 316
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 3 cut(s) 171, 202, 377
Sau96I GGNCC 2 cut(s) 135, 316
SchI GAGTC 1 cut(s) 185
SduI GDGCHC 1 cut(s) 196
SetI ASST 3 cut(s) 132, 144, 246
SinI GGWCC 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
Sse9I AATT 3 cut(s) 153, 164, 216
SsiI CCGC 2 cut(s) 160, 387
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 153, 164, 216
TatI WGTACW 1 cut(s) 265
TfiI GAWTC 1 cut(s) 54
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 17, 228, 298
VpaK11BI GGWCC 1 cut(s) 135
XceI RCATGY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.