Rh3BG342500

Belongs to the peptidase M16 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
36802123 .. 36807335
5213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG342500.1

Sequence Viewer

Length: 501 bp
ATGGTCAATCAGTATAGATACATGACAGTAACCTGTATTCTCTGTATTCAGGCCAGTTTTGCCCTGCTGGATACTTCTTTGTATGTGAATAATTACTATCTGGAACTGAAGCTGTGGAGCTTCAATGATAAGCTTCCAGCTGTATTGTCAACAATTTTGACAACAACCAAAAATTTCCTGCCAACTTATGATTGTTTCAAGGTTATTAAAGAAAATATGGAACGTCTGATAAAGAACACTAATATGAAGCCTCTGAGTCATGCTGAATACTTGAAACTGCAAGTTTTGTACCAGAGATTCTACGATGTAGATGACCAGTTGCATGTTTTAAATGGATTGTCTGTTTCTGATGTGAAGTCGTTTATTCCAGAGCTTTGGTCCCAGCTTTACTTTGAAGACCTTGGTCATGGAAATCTGTTAGAAGAAGAAGCAATTAGCCTTTTGAAAATGGTGAAAAACAATTTTTTCTGGACAACCACTTCCTACCGAACTGATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

166

Amino Acids

19.53

Weight (kDa)

5.58

Isoelectric Point (pI)

18.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 16 - 108 6.2e-16 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 1 cut(s) 290
AgsI TTSAA 5 cut(s) 124, 199, 274, 395, 445
AluBI AGCT 6 cut(s) 112, 120, 133, 140, 373, 385
AluI AGCT 6 cut(s) 112, 120, 133, 140, 373, 385
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 378
AsuHPI GGTGA 1 cut(s) 463
AvaII GGWCC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 402
BciVI GTATCC 1 cut(s) 64
BfuI GTATCC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 378
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 1 cut(s) 484
BoxI GACNNNNGTC 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 402
BsaJI CCNNGG 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 54, 316
BseDI CCNNGG 1 cut(s) 400
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 54, 316
BseYI CCCAGC 1 cut(s) 381
BshFI GGCC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 53
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 380
BsrI ACTGG 2 cut(s) 54, 316
BssECI CCNNGG 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNSI RCATGY 1 cut(s) 326
BstPAI GACNNNNGTC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 402
BstXI CCANNNNNNTGG 1 cut(s) 375
BsuI GTATCC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 289
CviAII CATG 4 cut(s) 22, 260, 323, 407
CviJI RGCY 9 cut(s) 53, 112, 120, 133, 140, 250, 373, 385, 438
CviKI_1 RGCY 9 cut(s) 53, 112, 120, 133, 140, 250, 373, 385, 438
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 254
DraI TTTAAA 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 400
Eco47I GGWCC 1 cut(s) 378
Eco57I CTGAAG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 4 cut(s) 25, 263, 326, 410
FaiI YATR 9 cut(s) 15, 23, 84, 189, 218, 245, 261, 324, 408
FaqI GGGAC 1 cut(s) 364
FatI CATG 4 cut(s) 21, 259, 322, 406
GsaI CCCAGC 1 cut(s) 385
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 4 cut(s) 25, 263, 326, 410
HincII GTYRAC 1 cut(s) 150
HindII GTYRAC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 256, 297
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 3 cut(s) 228, 255, 349
Hpy188III TCNNGA 3 cut(s) 101, 368, 469
Hpy8I GTNNAC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 2 cut(s) 280, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 254
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 4 cut(s) 25, 263, 326, 410
LmnI GCTCC 1 cut(s) 117
LweI GCATC 1 cut(s) 484
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 1 cut(s) 28
MboII GAAGA 3 cut(s) 407, 434, 437
MluCI AATT 5 cut(s) 91, 153, 172, 432, 460
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 1 cut(s) 261
MseI TTAA 3 cut(s) 207, 329, 499
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 59
NlaIII CATG 4 cut(s) 25, 263, 326, 410
NlaIV GGNNCC 1 cut(s) 380
NspI RCATGY 1 cut(s) 326
PfeI GAWTC 1 cut(s) 297
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 402
PspFI CCCAGC 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 380
PspPI GGNCC 1 cut(s) 378
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 242
SaqAI TTAA 3 cut(s) 207, 329, 499
Sau96I GGNCC 1 cut(s) 378
SchI GAGTC 1 cut(s) 265
SfaNI GCATC 1 cut(s) 484
SinI GGWCC 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 242
Sse9I AATT 5 cut(s) 91, 153, 172, 432, 460
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 226
TasI AATT 5 cut(s) 91, 153, 172, 432, 460
TfiI GAWTC 1 cut(s) 297
Tru1I TTAA 3 cut(s) 207, 329, 499
Tru9I TTAA 3 cut(s) 207, 329, 499
TspDTI ATGAA 1 cut(s) 260
VpaK11BI GGWCC 1 cut(s) 378
XapI RAATTY 1 cut(s) 172
XceI RCATGY 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.