RLG00000022738

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000891
Physical Location & Seq
Reverse (-)
11064496 .. 11067150
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022738

Sequence Viewer

Length: 1092 bp
ATGAAGTCGAAGAACACCCCCACAGAGACCACCGGCGAGTCCCGATTCCTGGGAACCATCTCCGCCTCATCGATTCGAAACCTCCACCACAGATCCATCTCAACAAGGCATGGAAAATCCTTCTTCAGCCCCAAAATTGCCCCACCAAATGCGGAAAAAGCCCCTTCACCTAACCCTAACATCCAAGCCGGCCACGATTCAGCTTTCGCTACCAAGCTGCTACCAGTACTGTTCAATTTGAGCAAATCTCCGACCTCTGCCGCTCAGAACATTCCGATGAAGAGTGAGATTGATGGATCTGAAAATCCCAGGTACATGTCTCTTGTTTTTCTACTTCATTTTGAAATGGTCAATCAGTATAGATACATGACAGTAACCTGTATTCTCTGTATTCAGACCAGTTTTGCCCTGCTGGATACTTCTTTGTATGTGAATAATTACTATCTGGAACTGAAGCTGTGGGGCTTCAATGATAAGCTTCCAGCTGTATTGTCAACAATTTTGACAACAACCAAAAATTTCCTGCCAACTTATGATCGTTTCAAGGTTATTAAAGAAAATATGGAACGTCTGATAAAGAACACTAATATGAAGCCTCTGAGTCATGCTGAATACTTGAAACTGCAAGTTTTGTACCAGAGATTCTATGATGTAGATGACCAGTTGCATGTTTTAAATGGATTGTCTGTTTCTGATGTGAAGTCATTTTTTCCAGAGCTTTGGTCCCAGCTTTACATTGAAGGCCTTGGTCATGGAAAATTGGAAATCTGTAATAAAATTTTTTCTGGACAACTACTTCCTACCGAATTGATGCTTAAGAACAATTGTATTTGTCTCGCTCCTGATGCTAACCTCATTAGAGATGTCAGTGTGAAGACGAAGGAGCAGCAGGGATATGTTGTTCAGTGTGACTGGGAGGTGATATTTGGTGTTTTTGGCTTTTATTTCATAGTTCAGTCGTCAGAGTACAACCCAATCTACTTGCAGTGGAGAGTTGACAACTTTACCAATGGTCTGGAAGACATTTTGTTGAAGCTCCTTCCCTCAGTTGACCTCCACAGTAGTTATGGTCTTTTGAATAATGACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

364

Amino Acids

41.34

Weight (kDa)

7.1

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 132 - 223 8.3e-17 Middle or third domain of peptidase_M16
PqqF-like_C_4 PF22456 292 - 345 1.9e-07 PQQ synthase PqqF-like, C-terminal lobe domain 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 263
AciI CCGC 3 cut(s) 63, 152, 261
AclWI GGATC 2 cut(s) 87, 304
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 2 cut(s) 517, 777
AcuI CTGAAG 2 cut(s) 109, 473
AfaI GTAC 4 cut(s) 228, 314, 635, 968
AfiI CCNNNNNNNGG 1 cut(s) 49
AflII CTTAAG 1 cut(s) 815
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 8 cut(s) 235, 344, 469, 544, 619, 740, 1033, 1078
AjnI CCWGG 2 cut(s) 48, 308
AloI GAACNNNNNNTCC 2 cut(s) 885, 917
AluBI AGCT 8 cut(s) 203, 217, 457, 478, 485, 718, 730, 1036
AluI AGCT 8 cut(s) 203, 217, 457, 478, 485, 718, 730, 1036
Alw26I GTCTC 3 cut(s) 20, 324, 839
AlwI GGATC 2 cut(s) 87, 304
AoxI GGCC 2 cut(s) 190, 742
ApeKI GCWGC 2 cut(s) 217, 886
ApoI RAATTY 2 cut(s) 517, 777
AspS9I GGNCC 1 cut(s) 723
AsuHPI GGTGA 2 cut(s) 159, 931
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 723
BbsI GAAGAC 2 cut(s) 881, 1026
BbvI GCAGC 2 cut(s) 204, 898
BccI CCATC 3 cut(s) 65, 104, 287
BciT130I CCWGG 2 cut(s) 50, 310
BciVI GTATCC 1 cut(s) 409
BcoDI GTCTC 3 cut(s) 20, 324, 839
BfrI CTTAAG 1 cut(s) 815
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 3 cut(s) 218, 261, 887
BlsI GCNGC 3 cut(s) 219, 262, 888
BmcAI AGTACT 1 cut(s) 228
Bme1390I CCNGG 2 cut(s) 50, 310
Bme18I GGWCC 1 cut(s) 723
BmgT120I GGNCC 1 cut(s) 723
BmiI GGNNCC 2 cut(s) 55, 725
BmrFI CCNGG 2 cut(s) 50, 310
BmrI ACTGGG 1 cut(s) 922
BmsI GCATC 2 cut(s) 801, 835
BmuI ACTGGG 1 cut(s) 922
BpiI GAAGAC 2 cut(s) 881, 1026
BplI GAGNNNNNCTC 2 cut(s) 232, 264
Bpu14I TTCGAA 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 49, 308, 745
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 2 cut(s) 32, 188
Bse1I ACTGG 4 cut(s) 224, 399, 661, 917
BseBI CCWGG 2 cut(s) 50, 310
BseCI ATCGAT 1 cut(s) 71
BseDI CCNNGG 3 cut(s) 49, 308, 745
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 3 cut(s) 278, 590, 1059
BseNI ACTGG 4 cut(s) 224, 399, 661, 917
BseXI GCAGC 2 cut(s) 204, 898
BseYI CCCAGC 1 cut(s) 726
BshFI GGCC 2 cut(s) 192, 744
BshVI ATCGAT 1 cut(s) 71
BsiSI CCGG 2 cut(s) 33, 189
BslFI GGGAC 2 cut(s) 25, 709
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 3 cut(s) 20, 324, 839
BsmFI GGGAC 2 cut(s) 25, 709
BsnI GGCC 2 cut(s) 192, 744
Bso31I GGTCTC 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 76
Bsp143I GATC 3 cut(s) 92, 296, 535
BspACI CCGC 3 cut(s) 63, 152, 261
BspANI GGCC 2 cut(s) 192, 744
BspCNI CTCAG 3 cut(s) 277, 591, 1058
BspDI ATCGAT 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 55, 725
BspPI GGATC 2 cut(s) 87, 304
BspT104I TTCGAA 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 815
BspTNI GGTCTC 1 cut(s) 20
BsrBI CCGCTC 1 cut(s) 263
BsrFI RCCGGY 2 cut(s) 32, 188
BsrI ACTGG 4 cut(s) 224, 399, 661, 917
BssAI RCCGGY 2 cut(s) 32, 188
BssECI CCNNGG 3 cut(s) 49, 308, 745
BssMI GATC 3 cut(s) 92, 296, 535
BssT1I CCWWGG 1 cut(s) 745
Bst2UI CCWGG 2 cut(s) 50, 310
Bst4CI ACNGT 3 cut(s) 231, 373, 1061
Bst6I CTCTTC 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 815
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 4 cut(s) 264, 599, 1045, 1089
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 3 cut(s) 95, 299, 538
BstMAI GTCTC 3 cut(s) 20, 324, 839
BstMBI GATC 3 cut(s) 92, 296, 535
BstMWI GCNNNNNNNGC 2 cut(s) 158, 845
BstNI CCWGG 2 cut(s) 50, 310
BstNSI RCATGY 2 cut(s) 319, 671
BstSCI CCNGG 2 cut(s) 48, 308
BstV1I GCAGC 2 cut(s) 204, 898
BstV2I GAAGAC 2 cut(s) 881, 1026
BstX2I RGATCY 2 cut(s) 92, 296
BstXI CCANNNNNNTGG 2 cut(s) 720, 1015
BstYI RGATCY 2 cut(s) 92, 296
Bsu15I ATCGAT 1 cut(s) 71
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 2 cut(s) 192, 744
BsuTUI ATCGAT 1 cut(s) 71
BtsCI GGATG 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 992
BtsIMutI CAGTG 3 cut(s) 874, 911, 992
Cac8I GCNNGC 1 cut(s) 190
Cfr10I RCCGGY 2 cut(s) 32, 188
Cfr13I GGNCC 1 cut(s) 723
ClaI ATCGAT 1 cut(s) 71
Csp6I GTAC 4 cut(s) 227, 313, 634, 967
CviAII CATG 6 cut(s) 110, 316, 367, 605, 668, 752
CviQI GTAC 4 cut(s) 227, 313, 634, 967
DdeI CTNAG 4 cut(s) 264, 599, 1045, 1089
DpnI GATC 3 cut(s) 94, 298, 537
DpnII GATC 3 cut(s) 92, 296, 535
DraI TTTAAA 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 745
Eco147I AGGCCT 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 723
Eco57I CTGAAG 2 cut(s) 109, 473
EcoRII CCWGG 2 cut(s) 48, 308
EcoT14I CCWWGG 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 6 cut(s) 113, 319, 370, 608, 671, 755
FaqI GGGAC 2 cut(s) 25, 709
FatI CATG 6 cut(s) 109, 315, 366, 604, 667, 751
Fnu4HI GCNGC 3 cut(s) 218, 261, 887
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 218, 261, 887
GluI GCNGC 3 cut(s) 218, 261, 887
GsaI CCCAGC 1 cut(s) 730
HaeIII GGCC 2 cut(s) 192, 744
HapII CCGG 2 cut(s) 33, 189
Hin1II CATG 6 cut(s) 113, 319, 370, 608, 671, 755
HincII GTYRAC 3 cut(s) 495, 997, 1051
HindII GTYRAC 3 cut(s) 495, 997, 1051
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 7 cut(s) 38, 45, 73, 197, 601, 642, 1085
HpaII CCGG 2 cut(s) 33, 189
HphI GGTGA 2 cut(s) 159, 931
Hpy166II GTNNAC 3 cut(s) 495, 997, 1051
Hpy188I TCNGA 9 cut(s) 252, 267, 276, 301, 396, 573, 600, 694, 964
Hpy188III TCNNGA 6 cut(s) 42, 446, 713, 786, 842, 1016
Hpy8I GTNNAC 3 cut(s) 495, 997, 1051
HpyAV CCTTC 5 cut(s) 130, 174, 734, 874, 1049
HpyCH4III ACNGT 3 cut(s) 231, 373, 1061
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 3 cut(s) 625, 667, 985
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 845
HpyF3I CTNAG 4 cut(s) 264, 599, 1045, 1089
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 6 cut(s) 113, 319, 370, 608, 671, 755
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 92, 296, 535
LmnI GCTCC 3 cut(s) 844, 883, 1041
Lsp1109I GCAGC 2 cut(s) 204, 898
LweI GCATC 2 cut(s) 801, 835
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 2 cut(s) 373, 908
MalI GATC 3 cut(s) 94, 298, 537
MbiI CCGCTC 1 cut(s) 263
MboI GATC 3 cut(s) 92, 296, 535
MboII GAAGA 5 cut(s) 22, 115, 292, 886, 1031
MfeI CAATTG 1 cut(s) 823
MflI RGATCY 2 cut(s) 92, 296
MluCI AATT 9 cut(s) 135, 235, 436, 498, 517, 758, 777, 806, 823
MlyI GAGTC 3 cut(s) 47, 610, 1079
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 8 cut(s) 76, 92, 265, 606, 863, 910, 1054, 1064
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 3 cut(s) 552, 674, 816
MslI CAYNNNNRTG 2 cut(s) 275, 587
MspA1I CMGCKG 1 cut(s) 485
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 2 cut(s) 33, 189
MspR9I CCNGG 2 cut(s) 50, 310
MunI CAATTG 1 cut(s) 823
MvaI CCWGG 2 cut(s) 50, 310
MwoI GCNNNNNNNGC 2 cut(s) 158, 845
NaeI GCCGGC 1 cut(s) 190
NdeII GATC 3 cut(s) 92, 296, 535
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 6 cut(s) 113, 319, 370, 608, 671, 755
NlaIV GGNNCC 2 cut(s) 55, 725
NmuCI GTSAC 1 cut(s) 908
NspI RCATGY 2 cut(s) 319, 671
NspV TTCGAA 1 cut(s) 76
PceI AGGCCT 1 cut(s) 744
PciI ACATGT 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 4 cut(s) 45, 73, 197, 642
PkrI GCNGC 3 cut(s) 219, 262, 888
PleI GAGTC 3 cut(s) 46, 609, 1079
PpsI GAGTC 3 cut(s) 46, 609, 1079
PscI ACATGT 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 48, 308
PspFI CCCAGC 1 cut(s) 726
PspGI CCWGG 2 cut(s) 48, 308
PspN4I GGNNCC 2 cut(s) 55, 725
PspPI GGNCC 1 cut(s) 723
PsuI RGATCY 2 cut(s) 92, 296
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 4 cut(s) 228, 314, 635, 968
RsaNI GTAC 4 cut(s) 227, 313, 634, 967
RseI CAYNNNNRTG 2 cut(s) 275, 587
SaqAI TTAA 3 cut(s) 552, 674, 816
SatI GCNGC 3 cut(s) 218, 261, 887
Sau3AI GATC 3 cut(s) 92, 296, 535
Sau96I GGNCC 1 cut(s) 723
ScaI AGTACT 1 cut(s) 228
SchI GAGTC 3 cut(s) 47, 610, 1079
ScrFI CCNGG 2 cut(s) 50, 310
SfaNI GCATC 2 cut(s) 801, 835
SfuI TTCGAA 1 cut(s) 76
SgrAI CRCCGGYG 1 cut(s) 32
SinI GGWCC 1 cut(s) 723
SmiMI CAYNNNNRTG 2 cut(s) 275, 587
SmlI CTYRAG 1 cut(s) 815
SmoI CTYRAG 1 cut(s) 815
Sse9I AATT 9 cut(s) 135, 235, 436, 498, 517, 758, 777, 806, 823
SseBI AGGCCT 1 cut(s) 744
SsiI CCGC 3 cut(s) 63, 152, 261
StuI AGGCCT 1 cut(s) 744
StyD4I CCNGG 2 cut(s) 48, 308
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 3 cut(s) 231, 373, 1061
TaiI ACGT 1 cut(s) 571
TaqI TCGA 3 cut(s) 8, 71, 76
TasI AATT 9 cut(s) 135, 235, 436, 498, 517, 758, 777, 806, 823
TatI WGTACW 2 cut(s) 226, 966
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 4 cut(s) 45, 73, 197, 642
Tru1I TTAA 3 cut(s) 552, 674, 816
Tru9I TTAA 3 cut(s) 552, 674, 816
TscAI CASTG 3 cut(s) 874, 911, 992
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 2 cut(s) 217, 886
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 5 cut(s) 17, 293, 326, 605, 937
TspRI CASTG 3 cut(s) 874, 911, 992
Vha464I CTTAAG 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 723
XapI RAATTY 2 cut(s) 517, 777
XceI RCATGY 2 cut(s) 319, 671
XcmI CCANNNNNNNNNTGG 1 cut(s) 1064
ZrmI AGTACT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.