Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000891

Physical Location & Seq

Genomic Coordinates Forward (+)

659156 .. 661834

Gene Structure 2679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00333240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGGAAAAGAGATCAACTTGCGGGAACAAATATTGAAATTGTACAGAGATGATTACCATGGTGGATTGATGAAGCTAGTTGTCATAGGACGAGAATCTCTTGATGTACTTGAGAATTGGGTTTTGGAATTGTTTGTAATGTCAAAAAAGGTCCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

53

Amino Acids

6.25

Weight (kDa)

8.06

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06900
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361
malus_domestica	MD03G1052300.v1.1 MD10G1074700.v1.1 MD11G1054400.v1.1 MD17G1069300.v1.1
prunus_persica	Prupe.6G041800_v2.0.a1 Prupe.6G041900_v2.0.a1 Prupe.6G041900_v2.0.a1
pyrus_communis	pycom03g04160 pycom11g04420 pycom11g04430 pycom16g23220 pycom16g23230
rosa_chinensis	RchiOBHm_Chr1g0322391 RchiOBHm_Chr1g0322401 RchiOBHm_Chr1g0322811 RchiOBHm_Chr1g0333061 RchiOBHm_Chr1g0333871 RchiOBHm_Chr1g0333951 RchiOBHm_Chr1g0335141 RchiOBHm_Chr1g0369151 RchiOBHm_Chr5g0072551 RchiOBHm_Chr5g0072781 RchiOBHm_Chr5g0072801 RchiOBHm_Chr5g0072811 RchiOBHm_Chr5g0074171
rosa_laevigata	RLG00000022738 RLG00000029400 RLG00000029495 RLG00000029524 RLG00000030375 RLG00000030390
rosa_multiflora	Rmu_sc0003160.1_g000024 Rmu_sc0005069.1_g000001 Rmu_sc0007177.1_g000010 Rmu_sc0021925.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008380 Rroxscaffold_5G00333240
rosa_rugosa	Rorug01G0112100 Rorug01G0119300 Rorug01G0120000 Rorug01G0120300 Rorug01G0489500 Rorug05G0420300 Rorug05G0429400
rosa_samantha	Rh1AG130000 Rh1CG123800 Rh1CG133900 Rh1DG135600 Rh1DG140200 Rh3BG342500 Rh3BG342600 Rh5AG470900 Rh5AG477000 Rh5CG520900 Rh5DG509700 Rh5DG509800
rosa_wichuraiana	Rw0G011760 Rw1G011290 Rw5G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	22
AfaI	GTAC	2 cut(s)	44, 108
AgsI	TTSAA	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	77
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	137
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	12
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	153
BsrGI	TGTACA	1 cut(s)	42
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	58
BstAUI	TGTACA	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	43, 107
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	1 cut(s)	76
CviKI_1	RGCY	1 cut(s)	76
CviQI	GTAC	2 cut(s)	43, 107
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	62
FaiI	YATR	2 cut(s)	60, 86
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	1 cut(s)	58
FauI	CCCGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	77
Hin1II	CATG	1 cut(s)	62
HinfI	GANTC	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	12
MaeI	CTAG	1 cut(s)	77
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MluCI	AATT	3 cut(s)	38, 115, 128
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	95
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
RsaI	GTAC	2 cut(s)	44, 108
RsaNI	GTAC	2 cut(s)	43, 107
Sau3AI	GATC	1 cut(s)	12
Sau96I	GGNCC	1 cut(s)	151
SetI	ASST	2 cut(s)	78, 153
SgeI	CNNG	7 cut(s)	31, 35, 71, 89, 104, 113, 122
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	38, 115, 128
SsiI	CCGC	1 cut(s)	22
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	58
TasI	AATT	3 cut(s)	38, 115, 128
TatI	WGTACW	2 cut(s)	42, 106
TfiI	GAWTC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	151
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.