Rorug01G0120000

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000891
Physical Location & Seq
Reverse (-)
20970720 .. 20971355
636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0120000.1

Sequence Viewer

Length: 636 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAATAGGTGGAATCCCACTACAGATCAGATAAGAATCCTCAAGGAGCTTTTCTACAATAAGGGAGTTAGGTCCCCAACTTTAGAGCAGATTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCCAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCGGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGGTACCAATTGGAAACCTGAGGATCAGATTAACTTAGAATCTTCTGCATCTGCTTCTGCTTCTTCAGCTGGTGTGATTGCTTTTAACGGGCAGAAGGGGAACTATGGTGGTTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTCCCAATGCATGGTGAGGACATCTTTGGTAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGAAAAAAAAAAAAAAAAATTCCGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

211

Amino Acids

23.51

Weight (kDa)

9.44

Isoelectric Point (pI)

56.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 4.7e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 335
AccB1I GGYRCC 1 cut(s) 335
AccB7I CCANNNNNTGG 1 cut(s) 494
AccIII TCCGGA 1 cut(s) 624
AciI CCGC 4 cut(s) 82, 265, 543, 631
AclWI GGATC 3 cut(s) 188, 363, 457
AcoI YGGCCR 1 cut(s) 205
AcsI RAATTY 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 2 cut(s) 203, 337
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 2 cut(s) 220, 470
AleI CACNNNNGTG 1 cut(s) 552
AluBI AGCT 5 cut(s) 130, 193, 401, 577, 602
AluI AGCT 5 cut(s) 130, 193, 401, 577, 602
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 188, 363, 457
Ama87I CYCGRG 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 624
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 620
Asp700I GAANNNNTTC 1 cut(s) 474
Asp718I GGTACC 1 cut(s) 335
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 335, 509
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
AxyI CCTNAGG 1 cut(s) 351
BaeGI GKGCMC 1 cut(s) 300
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BanI GGYRCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 256, 579
BbsI GAAGAC 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 26, 527
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 102
BisI GCNGC 2 cut(s) 51, 631
BlpI GCTNAGC 1 cut(s) 578
BlsI GCNGC 2 cut(s) 52, 632
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 4 cut(s) 6, 155, 337, 629
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 389
BpiI GAAGAC 1 cut(s) 527
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 578
BpuEI CTTGAG 2 cut(s) 107, 593
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 624
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse21I CCTNAGG 1 cut(s) 351
Bse8I GATNNNNATC 1 cut(s) 116
BseAI TCCGGA 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseJI GATNNNNATC 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 342, 592
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 207
BshNI GGYRCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 2 cut(s) 54, 625
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 579
Bsp13I TCCGGA 1 cut(s) 624
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 355, 449
Bsp1720I GCTNAGC 1 cut(s) 578
BspACI CCGC 4 cut(s) 82, 265, 543, 631
BspANI GGCC 1 cut(s) 207
BspCNI CTCAG 2 cut(s) 343, 591
BspEI TCCGGA 1 cut(s) 624
BspLI GGNNCC 4 cut(s) 6, 155, 337, 629
BspPI GGATC 3 cut(s) 188, 363, 457
BspT107I GGYRCC 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 6 cut(s) 106, 180, 210, 308, 355, 449
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 266
BstDEI CTNAG 3 cut(s) 351, 367, 578
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 358, 452
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 355, 449
BstMWI GCNNNNNNNGC 3 cut(s) 79, 398, 588
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 527
BstX2I RGATCY 2 cut(s) 180, 449
BstYI RGATCY 2 cut(s) 180, 449
Bsu36I CCTNAGG 1 cut(s) 351
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 2 cut(s) 37, 292
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 2 cut(s) 202, 336
CviAII CATG 6 cut(s) 70, 293, 301, 460, 494, 517
CviQI GTAC 2 cut(s) 202, 336
DdeI CTNAG 3 cut(s) 351, 367, 578
DpnI GATC 6 cut(s) 108, 182, 212, 310, 357, 451
DpnII GATC 6 cut(s) 106, 180, 210, 308, 355, 449
EaeI YGGCCR 1 cut(s) 205
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 577
Eco24I GRGCYC 2 cut(s) 256, 579
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 351
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 577
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 495
EcoT38I GRGCYC 2 cut(s) 256, 579
FaeI CATG 6 cut(s) 73, 296, 304, 463, 497, 520
FaiI YATR 9 cut(s) 71, 294, 302, 438, 447, 455, 461, 495, 518
FaqI GGGAC 1 cut(s) 139
FatI CATG 6 cut(s) 69, 292, 300, 459, 493, 516
Fnu4HI GCNGC 2 cut(s) 51, 631
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 579
Fsp4HI GCNGC 2 cut(s) 51, 631
GluI GCNGC 2 cut(s) 51, 631
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 207
HapII CCGG 2 cut(s) 54, 625
Hin1II CATG 6 cut(s) 73, 296, 304, 463, 497, 520
HinfI GANTC 4 cut(s) 94, 117, 172, 371
HpaII CCGG 2 cut(s) 54, 625
HphI GGTGA 2 cut(s) 335, 509
Hpy166II GTNNAC 2 cut(s) 244, 279
Hpy188I TCNGA 5 cut(s) 111, 177, 286, 360, 532
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 625
Hpy8I GTNNAC 2 cut(s) 244, 279
HpyAV CCTTC 2 cut(s) 421, 485
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 380, 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 398, 588
HpyF3I CTNAG 3 cut(s) 351, 367, 578
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 6 cut(s) 73, 296, 304, 463, 497, 520
Kpn2I TCCGGA 1 cut(s) 624
KpnI GGTACC 1 cut(s) 339
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 355, 449
LmnI GCTCC 2 cut(s) 127, 627
LpnPI CCDG 8 cut(s) 29, 67, 203, 221, 297, 363, 387, 601
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 389
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 512, 545
MalI GATC 6 cut(s) 108, 182, 212, 310, 357, 451
MboI GATC 6 cut(s) 106, 180, 210, 308, 355, 449
MboII GAAGA 5 cut(s) 280, 283, 366, 387, 532
MfeI CAATTG 1 cut(s) 340
MflI RGATCY 2 cut(s) 180, 449
MhlI GDGCHC 3 cut(s) 256, 300, 579
MluCI AATT 2 cut(s) 340, 620
Mph1103I ATGCAT 1 cut(s) 495
MroI TCCGGA 1 cut(s) 624
MroXI GAANNNNTTC 1 cut(s) 474
MseI TTAA 2 cut(s) 363, 417
MslI CAYNNNNRTG 1 cut(s) 552
MspA1I CMGCKG 3 cut(s) 193, 401, 633
MspI CCGG 2 cut(s) 54, 625
MspR9I CCNGG 1 cut(s) 55
MunI CAATTG 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 79, 398, 588
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 106, 180, 210, 308, 355, 449
NlaIII CATG 6 cut(s) 73, 296, 304, 463, 497, 520
NlaIV GGNNCC 4 cut(s) 6, 155, 337, 629
NmuCI GTSAC 1 cut(s) 545
NsiI ATGCAT 1 cut(s) 495
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 552
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 4 cut(s) 94, 117, 172, 371
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 2 cut(s) 52, 632
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 579
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 4 cut(s) 6, 155, 337, 629
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 449
PvuII CAGCTG 2 cut(s) 193, 401
RsaI GTAC 2 cut(s) 203, 337
RsaNI GTAC 2 cut(s) 202, 336
RseI CAYNNNNRTG 1 cut(s) 552
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 363, 417
SatI GCNGC 2 cut(s) 51, 631
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 355, 449
Sau96I GGNCC 2 cut(s) 153, 276
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 3 cut(s) 256, 300, 579
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 102
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 1 cut(s) 552
SmlI CTYRAG 2 cut(s) 122, 572
SmoI CTYRAG 2 cut(s) 122, 572
Sse9I AATT 2 cut(s) 340, 620
SsiI CCGC 4 cut(s) 82, 265, 543, 631
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 340, 620
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 4 cut(s) 94, 117, 172, 371
Tru1I TTAA 2 cut(s) 363, 417
Tru9I TTAA 2 cut(s) 363, 417
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 3 cut(s) 281, 470, 533
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 2 cut(s) 153, 276
XapI RAATTY 1 cut(s) 620
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 474
Zsp2I ATGCAT 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.