RchiOBHm_Chr1g0322401

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000891
Physical Location & Seq
Forward (+)
9759257 .. 9762759
3503 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55240

Sequence Viewer

Length: 960 bp
ATGAGGATTGATGCTGTATCAAAGCCCTCATTTATGTCGGAAGATTTCCAGTGCGAACCTTGGTTTGGGTCACATTATACTGAGGAATATATATCTCCATCTTTGATAGATCTGTGGAAGGACCTTCCAGAAATTGATGTTTCATTGCATCTCCCAGAAAAAATGAGTTCATTCCTACTGATTTTTCCATTCGTTCTGATGGTCTTGATACTACAGATACAGCTTCTCCGAGATGCAAACTTGATAGTATCGCTCCTCAAAGATGAGCTGAGTGAGATTGTTTATCAGGCTAGTGTTGCCAAGCTGGAAACTTCGGTATCTGTATTATCGACTGACAAGCTGGAGCTAAAGGTCTACATTTTCAATGACAAGCTTCCAGCTCTGTTGTCAAAGATTCTGAAAACAACCAAAAGTGTCATGCCAATTTCTGATCATTTTATGCGAAAGTTAAAGAACACCAATATGAAGCCTCTGAGTCACTCTACATGCTTGAGAGTGCATGTTTTGTTCCAGAGATTCTATGATGTTGATGAGAAGTTGCATGTTTTAAGTGGACTGTCTATTTCTGATGTGAAGTTATTTATTTCCCAGCTTTGGTCCAAGGTGTACATTGAAGGCCTCTGTCATGGAAATTTGTCAGAAAAAGAAGCAATCAGCCGTTCAGATATATTTAAAACAAATTTTGGTGTGCAACCACTTCCAGTTGAACTGATGCGTAGTGAACAGTGTATTTGTCTTCCTCCCTCTGCTAACCTCATTAGAGATATCAGTGTGAAGAATAAGTCTGAAACAAATTTGATGATTGAGCTGTATTTTCAAATTGAGAGGGAATTGAGGATCGAGTCCCCCAGATTGAGAGCCCTGATAGATCTTTTCAATGATATTGTGGAGGAACCACTTTTCAATCAGCTAAGCAAGGACTGGACAATGACTCTTTGGAGAATTACAGAGCTGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

319

Amino Acids

36.9

Weight (kDa)

5.6

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_M PF16187 80 - 181 1.4e-15 Middle or third domain of peptidase_M16
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AclWI GGATC 1 cut(s) 845
AcsI RAATTY 3 cut(s) 631, 679, 793
AfaI GTAC 1 cut(s) 608
AfiI CCNNNNNNNGG 2 cut(s) 65, 594
AgsI TTSAA 6 cut(s) 364, 614, 707, 818, 877, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AlwI GGATC 1 cut(s) 845
AoxI GGCC 1 cut(s) 616
ApoI RAATTY 3 cut(s) 631, 679, 793
AspS9I GGNCC 2 cut(s) 121, 597
AvaII GGWCC 2 cut(s) 121, 597
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BanII GRGCYC 1 cut(s) 862
BbsI GAAGAC 1 cut(s) 728
BccI CCATC 2 cut(s) 106, 193
BceAI ACGGC 1 cut(s) 642
BclI TGATCA 1 cut(s) 430
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 1 cut(s) 212
BglII AGATCT 2 cut(s) 109, 868
BlpI GCTNAGC 1 cut(s) 911
Bme18I GGWCC 2 cut(s) 121, 597
BmgT120I GGNCC 2 cut(s) 121, 597
BmiI GGNNCC 1 cut(s) 894
BmsI GCATC 3 cut(s) 157, 223, 702
BpiI GAAGAC 1 cut(s) 728
BpmI CTGGAG 1 cut(s) 362
Bpu1102I GCTNAGC 1 cut(s) 911
BpuEI CTTGAG 1 cut(s) 511
BsaJI CCNNGG 2 cut(s) 59, 600
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 594
Bse1I ACTGG 3 cut(s) 49, 701, 926
Bse3DI GCAATG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 59, 600
BseLI CCNNNNNNNGG 2 cut(s) 65, 594
BseMI GCAATG 1 cut(s) 143
BseMII CTCAG 3 cut(s) 72, 260, 464
BseNI ACTGG 3 cut(s) 49, 701, 926
BseRI GAGGAG 1 cut(s) 245
BseYI CCCAGC 2 cut(s) 588, 952
BshFI GGCC 1 cut(s) 618
BslFI GGGAC 1 cut(s) 829
BslI CCNNNNNNNGG 2 cut(s) 65, 594
BsmFI GGGAC 1 cut(s) 829
BsnI GGCC 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 862
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 4 cut(s) 109, 430, 837, 868
Bsp1720I GCTNAGC 1 cut(s) 911
BspANI GGCC 1 cut(s) 618
BspCNI CTCAG 3 cut(s) 73, 261, 465
BspLI GGNNCC 1 cut(s) 894
BspPI GGATC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 143
BsrGI TGTACA 1 cut(s) 606
BsrI ACTGG 3 cut(s) 49, 701, 926
BssECI CCNNGG 2 cut(s) 59, 600
BssMI GATC 4 cut(s) 109, 430, 837, 868
BssT1I CCWWGG 2 cut(s) 59, 600
Bst4CI ACNGT 2 cut(s) 558, 726
BstAUI TGTACA 1 cut(s) 606
BstDEI CTNAG 4 cut(s) 81, 269, 473, 911
BstKTI GATC 4 cut(s) 112, 433, 840, 871
BstMBI GATC 4 cut(s) 109, 430, 837, 868
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNSI RCATGY 3 cut(s) 489, 503, 545
BstSFI CTRYAG 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 728
BstX2I RGATCY 2 cut(s) 109, 868
BstYI RGATCY 2 cut(s) 109, 868
BsuRI GGCC 1 cut(s) 618
BtsIMutI CAGTG 3 cut(s) 56, 731, 775
Cfr13I GGNCC 2 cut(s) 121, 597
Csp6I GTAC 1 cut(s) 607
CviAII CATG 5 cut(s) 418, 486, 500, 542, 626
CviQI GTAC 1 cut(s) 607
DdeI CTNAG 4 cut(s) 81, 269, 473, 911
DpnI GATC 4 cut(s) 111, 432, 839, 870
DpnII GATC 4 cut(s) 109, 430, 837, 868
DraI TTTAAA 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 59, 600
Eco147I AGGCCT 1 cut(s) 618
Eco24I GRGCYC 1 cut(s) 862
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 2 cut(s) 121, 597
EcoO109I RGGNCCY 1 cut(s) 121
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 59, 600
EcoT38I GRGCYC 1 cut(s) 862
ErhI CCWWGG 2 cut(s) 59, 600
FaeI CATG 5 cut(s) 421, 489, 503, 545, 629
FaqI GGGAC 1 cut(s) 829
FatI CATG 5 cut(s) 417, 485, 499, 541, 625
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 354
FriOI GRGCYC 1 cut(s) 862
FspBI CTAG 1 cut(s) 291
GsaI CCCAGC 2 cut(s) 592, 956
GsuI CTGGAG 1 cut(s) 362
HaeIII GGCC 1 cut(s) 618
Hin1II CATG 5 cut(s) 421, 489, 503, 545, 629
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 5 cut(s) 394, 475, 516, 842, 931
Hpy166II GTNNAC 4 cut(s) 355, 554, 607, 722
Hpy188III TCNNGA 3 cut(s) 128, 205, 511
Hpy8I GTNNAC 4 cut(s) 355, 554, 607, 722
HpyAV CCTTC 3 cut(s) 112, 134, 608
HpyCH4III ACNGT 2 cut(s) 558, 726
HpyCH4V TGCA 5 cut(s) 148, 236, 499, 541, 691
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 4 cut(s) 81, 269, 473, 911
Hsp92II CATG 5 cut(s) 421, 489, 503, 545, 629
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 109, 430, 837, 868
LmnI GCTCC 2 cut(s) 258, 343
LweI GCATC 3 cut(s) 157, 223, 702
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 69, 476
MalI GATC 4 cut(s) 111, 432, 839, 870
MboI GATC 4 cut(s) 109, 430, 837, 868
MboII GAAGA 3 cut(s) 53, 728, 787
MflI RGATCY 2 cut(s) 109, 868
MhlI GDGCHC 1 cut(s) 862
MluCI AATT 8 cut(s) 132, 423, 631, 679, 793, 819, 830, 942
MlyI GAGTC 3 cut(s) 484, 851, 925
MmeI TCCRAC 1 cut(s) 18
MseI TTAA 3 cut(s) 449, 548, 672
MslI CAYNNNNRTG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 4 cut(s) 109, 430, 837, 868
NlaIII CATG 5 cut(s) 421, 489, 503, 545, 629
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 2 cut(s) 69, 476
NspI RCATGY 3 cut(s) 489, 503, 545
PceI AGGCCT 1 cut(s) 618
PfeI GAWTC 2 cut(s) 394, 516
PleI GAGTC 3 cut(s) 483, 850, 925
PpsI GAGTC 3 cut(s) 483, 850, 925
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
PspFI CCCAGC 2 cut(s) 588, 952
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 2 cut(s) 121, 597
PspPPI RGGWCCY 1 cut(s) 121
PsuI RGATCY 2 cut(s) 109, 868
RsaI GTAC 1 cut(s) 608
RsaNI GTAC 1 cut(s) 607
RseI CAYNNNNRTG 1 cut(s) 461
SaqAI TTAA 3 cut(s) 449, 548, 672
Sau3AI GATC 4 cut(s) 109, 430, 837, 868
Sau96I GGNCC 2 cut(s) 121, 597
SchI GAGTC 3 cut(s) 484, 851, 925
SduI GDGCHC 1 cut(s) 862
SfaNI GCATC 3 cut(s) 157, 223, 702
SfcI CTRYAG 1 cut(s) 212
SinI GGWCC 2 cut(s) 121, 597
SmiMI CAYNNNNRTG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 8 cut(s) 132, 423, 631, 679, 793, 819, 830, 942
SseBI AGGCCT 1 cut(s) 618
SspMI CTAG 1 cut(s) 291
StuI AGGCCT 1 cut(s) 618
StyI CCWWGG 2 cut(s) 59, 600
TaaI ACNGT 2 cut(s) 558, 726
TaqI TCGA 2 cut(s) 329, 840
TasI AATT 8 cut(s) 132, 423, 631, 679, 793, 819, 830, 942
TatI WGTACW 1 cut(s) 606
TfiI GAWTC 2 cut(s) 394, 516
Tru1I TTAA 3 cut(s) 449, 548, 672
Tru9I TTAA 3 cut(s) 449, 548, 672
TscAI CASTG 3 cut(s) 56, 731, 775
TseFI GTSAC 2 cut(s) 69, 476
Tsp45I GTSAC 2 cut(s) 69, 476
TspDTI ATGAA 3 cut(s) 132, 159, 479
TspRI CASTG 3 cut(s) 56, 731, 775
VpaK11BI GGWCC 2 cut(s) 121, 597
XapI RAATTY 3 cut(s) 631, 679, 793
XceI RCATGY 3 cut(s) 489, 503, 545
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.