Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000891

Physical Location & Seq

Genomic Coordinates Reverse (-)

79621540 .. 79622787

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG509700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGGGGAGTACAGAATTTCCAGATGAAAATGAGTATGACAGTTACTTGTCCAAGCATGGAGGGTGTTCAAATGCATACACGGAAGTAGAGCATACTTGCTACCATTTTGAAGTGAAAAGAGAGTTTCTCAAGGGTGCCTTGACAAGAACATATGCTCTTCATGGGGAGTACAAAGTTTCCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

61

Amino Acids

6.98

Weight (kDa)

5.41

Isoelectric Point (pI)

22.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	2 - 48	5.1e-09	Insulinase (Peptidase family M16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06900
fragaria_vesca	FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361 FvH4_3g40361
malus_domestica	MD03G1052300.v1.1 MD10G1074700.v1.1 MD11G1054400.v1.1 MD17G1069300.v1.1
prunus_persica	Prupe.6G041800_v2.0.a1 Prupe.6G041900_v2.0.a1 Prupe.6G041900_v2.0.a1
pyrus_communis	pycom03g04160 pycom11g04420 pycom11g04430 pycom16g23220 pycom16g23230
rosa_chinensis	RchiOBHm_Chr1g0322391 RchiOBHm_Chr1g0322401 RchiOBHm_Chr1g0322811 RchiOBHm_Chr1g0333061 RchiOBHm_Chr1g0333871 RchiOBHm_Chr1g0333951 RchiOBHm_Chr1g0335141 RchiOBHm_Chr1g0369151 RchiOBHm_Chr5g0072551 RchiOBHm_Chr5g0072781 RchiOBHm_Chr5g0072801 RchiOBHm_Chr5g0072811 RchiOBHm_Chr5g0074171
rosa_laevigata	RLG00000022738 RLG00000029400 RLG00000029495 RLG00000029524 RLG00000030375 RLG00000030390
rosa_multiflora	Rmu_sc0003160.1_g000024 Rmu_sc0005069.1_g000001 Rmu_sc0007177.1_g000010 Rmu_sc0021925.1_g000002
rosa_roxburghii	Rroxscaffold_1G00008380 Rroxscaffold_5G00333240
rosa_rugosa	Rorug01G0112100 Rorug01G0119300 Rorug01G0120000 Rorug01G0120300 Rorug01G0489500 Rorug05G0420300 Rorug05G0429400
rosa_samantha	Rh1AG130000 Rh1CG123800 Rh1CG133900 Rh1DG135600 Rh1DG140200 Rh3BG342500 Rh3BG342600 Rh5AG470900 Rh5AG477000 Rh5CG520900 Rh5DG509700 Rh5DG509800
rosa_wichuraiana	Rw0G011760 Rw1G011290 Rw5G044290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	2 cut(s)	10, 170
AgsI	TTSAA	2 cut(s)	69, 110
ApoI	RAATTY	1 cut(s)	14
BanI	GGYRCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	111, 143
BpuEI	CTTGAG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	179
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	136
BspQI	GCTCTTC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	134
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	9, 169
CviAII	CATG	2 cut(s)	56, 161
CviQI	GTAC	2 cut(s)	9, 169
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	76
FaeI	CATG	2 cut(s)	59, 164
FaiI	YATR	7 cut(s)	36, 57, 76, 93, 151, 153, 162
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	2 cut(s)	55, 160
FauNDI	CATATG	1 cut(s)	151
HapII	CCGG	1 cut(s)	180
Hin1II	CATG	2 cut(s)	59, 164
HpaII	CCGG	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	59, 164
LguI	GCTCTTC	1 cut(s)	162
LpnPI	CCDG	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	41
MboII	GAAGA	1 cut(s)	149
MluCI	AATT	1 cut(s)	14
MnlI	CCTC	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	76
MspI	CCGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	151
NlaIII	CATG	2 cut(s)	59, 164
NlaIV	GGNNCC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	10, 170
RsaNI	GTAC	2 cut(s)	9, 169
SapI	GCTCTTC	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	41
TasI	AATT	1 cut(s)	14
TatI	WGTACW	2 cut(s)	8, 168
TspDTI	ATGAA	2 cut(s)	39, 149
TspGWI	ACGGA	1 cut(s)	95
XapI	RAATTY	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.