Rw1G011290

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000891
Physical Location & Seq
Reverse (-)
25457682 .. 25459634
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G011290.1

Sequence Viewer

Length: 681 bp
ATGGACCATTTTTGCATTGTCAAGTGGCCAGAAGAATCTCTTGTTGTACTCGAGAATTGGGTTTTGGAATTGTTTGGTAACGTCAAAAAAGGTCCCCCCCCAGTAAATCTGGAATTCAAGGCTGAAGGTCCAATTTGGAAAGCTGGAAAACTTTACAGACTAGAGGCTGTTAAAGATGTTCATATACTCCACTTAACATGGACATTACCATGCCTTCGTCAAGACTATTTGAAGAAATCAGAAGATTATTTATCTCATCTCCTTGGGCATGAGGGCAGGGGAAGTTTGCATTTCTATTTCAAGGTTAAAGGGTGGGCAACATCTCTGGCTGCTGGTGTTGGAGATGACGGGATGCATCATTCGTTTTTGGCTTATGTCTTTTGCATGGACGTTCATCTCACTGACTCTGGATTGGATAAGATTTTTGATATAATTGGCATGGTCTACCAATACATAAAGTTATTGCGTCATGTGTACCCACAACAATGGATATTTAAGGAACTGCAGGATACTGGGAACATGGATTTTAGATTTGCAGAGGAGCAGCCTCAAGATGATTATGCCTCAGAATTTGCAGGAAATTTACTAGTATATGCAGCAGAACTTGTTATTTATGGGTCCTATGCATACAAGATTCCGGAGAAGAATATGTTCTTGATTTCCTTAGACCAGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000166 GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005102 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005777 GO:0005782 GO:0005829 GO:0006508 GO:0006518 GO:0006605 GO:0006625 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007568 GO:0008104 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0008270 GO:0008286 GO:0008340 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009893 GO:0009894 GO:0009896 GO:0009986 GO:0009987 GO:0010033 GO:0010243 GO:0010259 GO:0010604 GO:0010815 GO:0010992 GO:0015031 GO:0015833 GO:0016043 GO:0016787 GO:0017046 GO:0017076 GO:0017144 GO:0019222 GO:0019538 GO:0019725 GO:0022607 GO:0023052 GO:0030163 GO:0030554 GO:0031334 GO:0031907 GO:0031974 GO:0032459 GO:0032461 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032868 GO:0032869 GO:0032870 GO:0033036 GO:0033218 GO:0033365 GO:0034613 GO:0034641 GO:0035639 GO:0036094 GO:0042176 GO:0042221 GO:0042277 GO:0042562 GO:0042579 GO:0042592 GO:0042737 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043434 GO:0043559 GO:0043574 GO:0043603 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045732 GO:0046872 GO:0046907 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0048856 GO:0050435 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051259 GO:0051260 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070011 GO:0070013 GO:0070727 GO:0070887 GO:0071310 GO:0071375 GO:0071417 GO:0071495 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080090 GO:0097159 GO:0097242 GO:0097367 GO:0140030 GO:0140035 GO:0140036 GO:0140096 GO:1901142 GO:1901143 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901652 GO:1901653 GO:1901698 GO:1901699 GO:1901700 GO:1901701
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_M16 Peptidase_M16_C Peptidase_M16_M

Protein Analysis

226

Amino Acids

26.16

Weight (kDa)

5.65

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16_C PF05193 16 - 169 2.6e-08 Peptidase M16 inactive domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 444
AccIII TCCGGA 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 26
AcsI RAATTY 3 cut(s) 113, 569, 580
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 2 cut(s) 48, 476
AgsI TTSAA 3 cut(s) 118, 232, 301
AhlI ACTAGT 1 cut(s) 586
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 637
AoxI GGCC 1 cut(s) 26
ApeKI GCWGC 3 cut(s) 329, 544, 596
ApoI RAATTY 3 cut(s) 113, 569, 580
Asp700I GAANNNNTTC 1 cut(s) 650
AspS9I GGNCC 4 cut(s) 4, 92, 128, 618
AvaI CYCGRG 1 cut(s) 50
AvaII GGWCC 4 cut(s) 4, 92, 128, 618
BalI TGGCCA 1 cut(s) 28
BbvI GCAGC 3 cut(s) 316, 556, 608
BciVI GTATCC 1 cut(s) 502
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 2 cut(s) 161, 587
BfmI CTRYAG 1 cut(s) 503
BfuI GTATCC 1 cut(s) 502
BisI GCNGC 3 cut(s) 330, 545, 597
BlsI GCNGC 3 cut(s) 331, 546, 598
Bme18I GGWCC 4 cut(s) 4, 92, 128, 618
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 4 cut(s) 4, 92, 128, 618
BmiI GGNNCC 2 cut(s) 94, 619
BmrI ACTGGG 2 cut(s) 95, 522
BmsI GCATC 2 cut(s) 342, 364
BmuI ACTGGG 2 cut(s) 95, 522
BpuEI CTTGAG 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 262
BsaWI WCCGGW 1 cut(s) 637
Bse1I ACTGG 2 cut(s) 101, 517
BseAI TCCGGA 1 cut(s) 637
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 101, 517
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 3 cut(s) 316, 556, 608
BshFI GGCC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 638
BslFI GGGAC 1 cut(s) 78
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 50
Bsp13I TCCGGA 1 cut(s) 637
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 578
BspEI TCCGGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 94, 619
BspMAI CTGCAG 1 cut(s) 507
BsrI ACTGG 2 cut(s) 101, 517
BssECI CCNNGG 1 cut(s) 262
BssT1I CCWWGG 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 565, 664
BstF5I GGATG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 503
BstV1I GCAGC 3 cut(s) 316, 556, 608
BstXI CCANNNNNNTGG 1 cut(s) 486
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 1 cut(s) 28
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 1 cut(s) 399
Cfr13I GGNCC 4 cut(s) 4, 92, 128, 618
CseI GACGC 1 cut(s) 455
Csp6I GTAC 2 cut(s) 47, 475
CviAII CATG 8 cut(s) 198, 210, 269, 385, 439, 470, 520, 678
CviJI RGCY 7 cut(s) 28, 122, 143, 167, 329, 371, 547
CviKI_1 RGCY 7 cut(s) 28, 122, 143, 167, 329, 371, 547
CviQI GTAC 2 cut(s) 47, 475
DdeI CTNAG 2 cut(s) 565, 664
EaeI YGGCCR 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 4 cut(s) 4, 92, 128, 618
Eco57I CTGAAG 1 cut(s) 144
Eco88I CYCGRG 1 cut(s) 50
EcoO109I RGGNCCY 2 cut(s) 92, 618
EcoRI GAATTC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 262
EcoT22I ATGCAT 2 cut(s) 357, 628
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 8 cut(s) 201, 213, 272, 388, 442, 473, 523, 681
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 78
FatI CATG 8 cut(s) 197, 209, 268, 384, 438, 469, 519, 677
FblI GTMKAC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 330, 545, 597
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 3 cut(s) 330, 545, 597
FspBI CTAG 2 cut(s) 161, 587
GluI GCNGC 3 cut(s) 330, 545, 597
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 638
HgaI GACGC 1 cut(s) 455
Hin1II CATG 8 cut(s) 201, 213, 272, 388, 442, 473, 523, 681
HinfI GANTC 3 cut(s) 35, 404, 634
HpaII CCGG 1 cut(s) 638
Hpy166II GTNNAC 2 cut(s) 445, 475
Hpy188I TCNGA 2 cut(s) 241, 568
Hpy188III TCNNGA 7 cut(s) 52, 110, 221, 408, 551, 638, 655
Hpy8I GTNNAC 2 cut(s) 445, 475
HpyAV CCTTC 2 cut(s) 119, 224
HpyCH4IV ACGT 2 cut(s) 81, 390
HpyCH4V TGCA 9 cut(s) 15, 289, 355, 384, 505, 536, 575, 596, 626
HpyF3I CTNAG 2 cut(s) 565, 664
HpySE526I ACGT 2 cut(s) 81, 390
Hsp92II CATG 8 cut(s) 201, 213, 272, 388, 442, 473, 523, 681
Kpn2I TCCGGA 1 cut(s) 637
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 3 cut(s) 316, 556, 608
LweI GCATC 2 cut(s) 342, 364
MaeI CTAG 2 cut(s) 161, 587
MaeII ACGT 2 cut(s) 81, 390
MaeIII GTNAC 1 cut(s) 77
MboII GAAGA 4 cut(s) 44, 244, 254, 655
MlsI TGGCCA 1 cut(s) 28
MluCI AATT 7 cut(s) 55, 68, 113, 132, 432, 569, 580
MluNI TGGCCA 1 cut(s) 28
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 5 cut(s) 157, 265, 532, 558, 574
Mox20I TGGCCA 1 cut(s) 28
Mph1103I ATGCAT 2 cut(s) 357, 628
MroI TCCGGA 1 cut(s) 637
MroXI GAANNNNTTC 1 cut(s) 650
MscI TGGCCA 1 cut(s) 28
MseI TTAA 4 cut(s) 171, 194, 306, 495
MslI CAYNNNNRTG 2 cut(s) 208, 484
Msp20I TGGCCA 1 cut(s) 28
MspI CCGG 1 cut(s) 638
NlaIII CATG 8 cut(s) 201, 213, 272, 388, 442, 473, 523, 681
NlaIV GGNNCC 2 cut(s) 94, 619
NsiI ATGCAT 2 cut(s) 357, 628
PaeR7I CTCGAG 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 2 cut(s) 35, 634
PkrI GCNGC 3 cut(s) 331, 546, 598
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PpuMI RGGWCCY 2 cut(s) 92, 618
Psp5II RGGWCCY 2 cut(s) 92, 618
PspN4I GGNNCC 2 cut(s) 94, 619
PspPI GGNCC 4 cut(s) 4, 92, 128, 618
PspPPI RGGWCCY 2 cut(s) 92, 618
PstI CTGCAG 1 cut(s) 507
RsaI GTAC 2 cut(s) 48, 476
RsaNI GTAC 2 cut(s) 47, 475
RseI CAYNNNNRTG 2 cut(s) 208, 484
SaqAI TTAA 4 cut(s) 171, 194, 306, 495
SatI GCNGC 3 cut(s) 330, 545, 597
Sau96I GGNCC 4 cut(s) 4, 92, 128, 618
SchI GAGTC 1 cut(s) 398
SetI ASST 6 cut(s) 84, 94, 130, 145, 306, 393
SfaNI GCATC 2 cut(s) 342, 364
SfcI CTRYAG 1 cut(s) 503
Sfr274I CTCGAG 1 cut(s) 50
SinI GGWCC 4 cut(s) 4, 92, 128, 618
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 2 cut(s) 208, 484
SmlI CTYRAG 2 cut(s) 50, 549
SmoI CTYRAG 2 cut(s) 50, 549
SpeI ACTAGT 1 cut(s) 586
Sse9I AATT 7 cut(s) 55, 68, 113, 132, 432, 569, 580
SspMI CTAG 2 cut(s) 161, 587
StyI CCWWGG 1 cut(s) 262
TaiI ACGT 2 cut(s) 84, 393
TaqI TCGA 1 cut(s) 51
TasI AATT 7 cut(s) 55, 68, 113, 132, 432, 569, 580
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 2 cut(s) 35, 634
Tru1I TTAA 4 cut(s) 171, 194, 306, 495
Tru9I TTAA 4 cut(s) 171, 194, 306, 495
TscAI CASTG 1 cut(s) 406
TseI GCWGC 3 cut(s) 329, 544, 596
TspDTI ATGAA 2 cut(s) 170, 383
TspRI CASTG 1 cut(s) 406
VpaK11BI GGWCC 4 cut(s) 4, 92, 128, 618
XapI RAATTY 3 cut(s) 113, 569, 580
XhoI CTCGAG 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 444
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 2 cut(s) 161, 587
Zsp2I ATGCAT 2 cut(s) 357, 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.