Rorug01G0489500

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000274
Physical Location & Seq
Reverse (-)
57464437 .. 57467558
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0489500.1

Sequence Viewer

Length: 1029 bp
ATGAAACCAAAAACTACTGGTGTGCCTAGATCTCAGAAGTCGAAACCTTTTCAGGGTGATGGACCTAATTGGGTTCTTATTGCCGGCGGTGCCTTATTAAGTACGTTATCGATACGTCTTGGCTACAAGCTGAAGCAAGCACTTGACATAAAACAGCAGGAGAATGCTAGTAATGGAAGTGGAAAATCCTCTGACAGAAGGATGCCTGCAGGTTGCCACATGCACTCAAATGTTTATTCCTTTACACAACAAGATGATGGCAGTTGCTTTAATTGCATTTCAGGAACTGAGAGCATGATGGAGATGAAGTGCCTGCCTAATGGCCAGATGCTGACTGAATCTGATGGAACCTTGCCTTTGGTGACGGTTCCAGCCCCTCAATTTAACAAGGAGAATGGCATCATCTGGGCATCTTCTCCTGATCGCCTTGAGATGCCTCCAAAGCCCTTCCTACACCATTCAAATTGCTCAGATTCTCCATGTGTTTCAGACTCTGGCTCTGACATCTTCAGTAAGCGGGAAGTAATACAAAAACTTAGGCAACAATTGAAGAGAAGAGATGACATGATCCTAGAGATGCAGGATCAGATTGTAGAGTTGCAGAATTCACTGAATGCTCAGCTGGCACATTCTGCCCATTTGCAATCGCAGCTTGATGCAGCAAATAGGGACTTTTTTGATTCTGAGAGAGAAATCCAAAGGCTTAGGAAGGCGATTGCAGATCACTGTGTGGGACATGTGAGCTCCAACGACAAACTAGCCCCGGCCACTATATGGCAATCTGAAGTAAGAAACGGTCATGGAAATGGATGTCTTGATGGGGAAAACAATCTTGATGCCTCAGAAAAAGGAAGAGGGGGGGATGGAGGGAGGATTGAAATGCTGAGGAGGGAAGTAGGAGAATTGAAGGAAGTGATAGATGGAAAGGAGTACTTGCTGCAGAGCTACAAGGAGCAGAAAGCAGAGCTCTCACTGAAAATCAAAGAGTTGCAGCAGAGACTAGATTCTCAACTTCCCAATATTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

342

Amino Acids

37.99

Weight (kDa)

6.33

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 89
AccB7I CCANNNNNTGG 1 cut(s) 774
AciI CCGC 2 cut(s) 87, 517
AclWI GGATC 2 cut(s) 562, 591
AcoI YGGCCR 2 cut(s) 322, 765
AcsI RAATTY 1 cut(s) 604
AcuI CTGAAG 3 cut(s) 152, 493, 804
AdeI CACNNNGTG 1 cut(s) 730
AfaI GTAC 2 cut(s) 103, 932
AfiI CCNNNNNNNGG 2 cut(s) 53, 774
AflIII ACRYGT 1 cut(s) 736
AgsI TTSAA 4 cut(s) 462, 550, 878, 907
AluBI AGCT 6 cut(s) 130, 622, 652, 744, 945, 967
AluI AGCT 6 cut(s) 130, 622, 652, 744, 945, 967
Alw21I GWGCWC 2 cut(s) 746, 969
Alw26I GTCTC 1 cut(s) 991
AlwI GGATC 2 cut(s) 562, 591
AlwNI CAGNNNCTG 3 cut(s) 287, 331, 494
AoxI GGCC 2 cut(s) 322, 765
ApeKI GCWGC 4 cut(s) 649, 659, 937, 991
ApoI RAATTY 1 cut(s) 604
AspS9I GGNCC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 2 cut(s) 68, 373
AvaII GGWCC 1 cut(s) 62
BalI TGGCCA 1 cut(s) 324
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 2 cut(s) 746, 969
Bbv12I GWGCWC 2 cut(s) 746, 969
BbvCI CCTCAGC 1 cut(s) 884
BbvI GCAGC 4 cut(s) 661, 671, 924, 1003
BccI CCATC 7 cut(s) 53, 251, 292, 338, 812, 857, 914
BcnI CCSGG 1 cut(s) 764
BcoDI GTCTC 1 cut(s) 991
BfaI CTAG 5 cut(s) 27, 168, 572, 758, 1001
BfmI CTRYAG 2 cut(s) 207, 938
BfuAI ACCTGC 1 cut(s) 200
BglII AGATCT 1 cut(s) 29
BisI GCNGC 4 cut(s) 650, 660, 938, 992
BlpI GCTNAGC 1 cut(s) 618
BlsI GCNGC 4 cut(s) 651, 661, 939, 993
BmcAI AGTACT 1 cut(s) 932
Bme1390I CCNGG 1 cut(s) 764
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 62
BmiI GGNNCC 3 cut(s) 91, 349, 369
BmrFI CCNGG 1 cut(s) 764
BmsI GCATC 8 cut(s) 192, 318, 408, 419, 423, 567, 646, 826
Bpu10I CCTNAGC 2 cut(s) 704, 884
Bpu1102I GCTNAGC 1 cut(s) 618
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 1 cut(s) 764
Bsa29I ATCGAT 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 762
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 774
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 22
BseCI ATCGAT 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 762
BseGI GGATG 3 cut(s) 207, 815, 868
BseLI CCNNNNNNNGG 2 cut(s) 53, 774
BseMII CTCAG 7 cut(s) 47, 279, 483, 632, 675, 855, 875
BseNI ACTGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 901
BseXI GCAGC 4 cut(s) 661, 671, 924, 1003
BshFI GGCC 2 cut(s) 324, 767
BshNI GGYRCC 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 110
BsiHKAI GWGCWC 2 cut(s) 746, 969
BsiSI CCGG 2 cut(s) 84, 764
BslFI GGGAC 2 cut(s) 683, 747
BslI CCNNNNNNNGG 2 cut(s) 53, 774
BsmAI GTCTC 1 cut(s) 991
BsmFI GGGAC 2 cut(s) 683, 747
BsmI GAATGC 2 cut(s) 169, 619
BsnI GGCC 2 cut(s) 324, 767
Bsp1286I GDGCHC 2 cut(s) 746, 969
Bsp143I GATC 5 cut(s) 29, 421, 567, 583, 721
Bsp1720I GCTNAGC 1 cut(s) 618
BspACI CCGC 2 cut(s) 87, 517
BspANI GGCC 2 cut(s) 324, 767
BspCNI CTCAG 7 cut(s) 46, 280, 482, 631, 676, 854, 876
BspDI ATCGAT 1 cut(s) 110
BspLI GGNNCC 3 cut(s) 91, 349, 369
BspMAI CTGCAG 2 cut(s) 211, 942
BspMI ACCTGC 1 cut(s) 200
BspPI GGATC 2 cut(s) 562, 591
BspT107I GGYRCC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 762
BssMI GATC 5 cut(s) 29, 421, 567, 583, 721
Bst4CI ACNGT 3 cut(s) 367, 728, 797
Bst6I CTCTTC 3 cut(s) 545, 550, 847
BstAPI GCANNNNNTGC 1 cut(s) 632
BstC8I GCNNGC 5 cut(s) 85, 138, 207, 314, 624
BstDEI CTNAG 9 cut(s) 33, 288, 469, 536, 618, 684, 704, 841, 884
BstF5I GGATG 3 cut(s) 207, 815, 868
BstKTI GATC 5 cut(s) 32, 424, 570, 586, 724
BstMAI GTCTC 1 cut(s) 991
BstMBI GATC 5 cut(s) 29, 421, 567, 583, 721
BstMWI GCNNNNNNNGC 6 cut(s) 89, 273, 442, 623, 632, 649
BstNSI RCATGY 2 cut(s) 223, 740
BstSCI CCNGG 1 cut(s) 762
BstSFI CTRYAG 2 cut(s) 207, 938
BstV1I GCAGC 4 cut(s) 661, 671, 924, 1003
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
Bsu15I ATCGAT 1 cut(s) 110
BsuRI GGCC 2 cut(s) 324, 767
BsuTUI ATCGAT 1 cut(s) 110
BtsCI GGATG 3 cut(s) 207, 815, 868
BtsIMutI CAGTG 3 cut(s) 608, 724, 971
BveI ACCTGC 1 cut(s) 200
Cac8I GCNNGC 5 cut(s) 85, 138, 207, 314, 624
CaiI CAGNNNCTG 3 cut(s) 287, 331, 494
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 110
Csp6I GTAC 2 cut(s) 102, 931
CviAII CATG 6 cut(s) 220, 295, 480, 565, 737, 800
CviQI GTAC 2 cut(s) 102, 931
DdeI CTNAG 9 cut(s) 33, 288, 469, 536, 618, 684, 704, 841, 884
DpnI GATC 5 cut(s) 31, 423, 569, 585, 723
DpnII GATC 5 cut(s) 29, 421, 567, 583, 721
DraIII CACNNNGTG 1 cut(s) 730
EaeI YGGCCR 2 cut(s) 322, 765
Eam1104I CTCTTC 3 cut(s) 545, 550, 847
EarI CTCTTC 3 cut(s) 545, 550, 847
Ecl136II GAGCTC 2 cut(s) 744, 967
Eco24I GRGCYC 2 cut(s) 746, 969
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 2 cut(s) 744, 967
Eco57I CTGAAG 3 cut(s) 152, 493, 804
EcoICRI GAGCTC 2 cut(s) 744, 967
EcoRI GAATTC 1 cut(s) 604
EcoT38I GRGCYC 2 cut(s) 746, 969
FaeI CATG 6 cut(s) 223, 298, 483, 568, 740, 803
FaiI YATR 9 cut(s) 149, 221, 296, 481, 566, 738, 773, 775, 801
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 2 cut(s) 683, 747
FatI CATG 6 cut(s) 219, 294, 479, 564, 736, 799
FauI CCCGC 1 cut(s) 510
Fnu4HI GCNGC 4 cut(s) 650, 660, 938, 992
FokI GGATG 3 cut(s) 214, 822, 875
FriOI GRGCYC 2 cut(s) 746, 969
Fsp4HI GCNGC 4 cut(s) 650, 660, 938, 992
FspBI CTAG 5 cut(s) 27, 168, 572, 758, 1001
GluI GCNGC 4 cut(s) 650, 660, 938, 992
HaeIII GGCC 2 cut(s) 324, 767
HapII CCGG 2 cut(s) 84, 764
Hin1II CATG 6 cut(s) 223, 298, 483, 568, 740, 803
HinfI GANTC 5 cut(s) 338, 473, 491, 680, 1004
HpaII CCGG 2 cut(s) 84, 764
HphI GGTGA 2 cut(s) 68, 373
Hpy188III TCNNGA 4 cut(s) 282, 419, 815, 833
HpyAV CCTTC 4 cut(s) 192, 457, 703, 901
HpyCH4III ACNGT 3 cut(s) 367, 728, 797
HpyCH4IV ACGT 2 cut(s) 104, 115
HpyF10VI GCNNNNNNNGC 6 cut(s) 89, 273, 442, 623, 632, 649
HpyF3I CTNAG 9 cut(s) 33, 288, 469, 536, 618, 684, 704, 841, 884
HpySE526I ACGT 2 cut(s) 104, 115
Hsp92II CATG 6 cut(s) 223, 298, 483, 568, 740, 803
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 5 cut(s) 29, 421, 567, 583, 721
LmnI GCTCC 2 cut(s) 749, 952
Lsp1109I GCAGC 4 cut(s) 661, 671, 924, 1003
LweI GCATC 8 cut(s) 192, 318, 408, 419, 423, 567, 646, 826
MaeI CTAG 5 cut(s) 27, 168, 572, 758, 1001
MaeII ACGT 2 cut(s) 104, 115
MaeIII GTNAC 1 cut(s) 361
MalI GATC 5 cut(s) 31, 423, 569, 585, 723
MboI GATC 5 cut(s) 29, 421, 567, 583, 721
MboII GAAGA 5 cut(s) 405, 499, 562, 567, 864
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 746, 969
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 7 cut(s) 67, 271, 380, 463, 545, 604, 902
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 9 cut(s) 199, 387, 447, 848, 850, 860, 864, 879, 882
Mox20I TGGCCA 1 cut(s) 324
MroNI GCCGGC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 324
MseI TTAA 3 cut(s) 98, 270, 384
MslI CAYNNNNRTG 2 cut(s) 228, 804
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 2 cut(s) 84, 764
MspR9I CCNGG 1 cut(s) 764
MunI CAATTG 1 cut(s) 545
Mva1269I GAATGC 2 cut(s) 169, 619
MwoI GCNNNNNNNGC 6 cut(s) 89, 273, 442, 623, 632, 649
NaeI GCCGGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 764
NdeII GATC 5 cut(s) 29, 421, 567, 583, 721
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 6 cut(s) 223, 298, 483, 568, 740, 803
NlaIV GGNNCC 3 cut(s) 91, 349, 369
NmuCI GTSAC 1 cut(s) 361
NspI RCATGY 2 cut(s) 223, 740
PciI ACATGT 1 cut(s) 736
PctI GAATGC 2 cut(s) 169, 619
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 4 cut(s) 338, 473, 680, 1004
PflMI CCANNNNNTGG 1 cut(s) 774
PkrI GCNGC 4 cut(s) 651, 661, 939, 993
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PscI ACATGT 1 cut(s) 736
Psp124BI GAGCTC 2 cut(s) 746, 969
PspN4I GGNNCC 3 cut(s) 91, 349, 369
PspPI GGNCC 1 cut(s) 62
PstI CTGCAG 2 cut(s) 211, 942
PstNI CAGNNNCTG 3 cut(s) 287, 331, 494
PsuI RGATCY 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 622
RsaI GTAC 2 cut(s) 103, 932
RsaNI GTAC 2 cut(s) 102, 931
RseI CAYNNNNRTG 2 cut(s) 228, 804
SacI GAGCTC 2 cut(s) 746, 969
SaqAI TTAA 3 cut(s) 98, 270, 384
SatI GCNGC 4 cut(s) 650, 660, 938, 992
Sau3AI GATC 5 cut(s) 29, 421, 567, 583, 721
Sau96I GGNCC 1 cut(s) 62
SbfI CCTGCAGG 1 cut(s) 211
ScaI AGTACT 1 cut(s) 932
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 764
SdaI CCTGCAGG 1 cut(s) 211
SduI GDGCHC 2 cut(s) 746, 969
SfaNI GCATC 8 cut(s) 192, 318, 408, 419, 423, 567, 646, 826
SfcI CTRYAG 2 cut(s) 207, 938
SinI GGWCC 1 cut(s) 62
SmiMI CAYNNNNRTG 2 cut(s) 228, 804
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse8387I CCTGCAGG 1 cut(s) 211
Sse9I AATT 7 cut(s) 67, 271, 380, 463, 545, 604, 902
SsiI CCGC 2 cut(s) 87, 517
SspI AATATT 1 cut(s) 1021
SspMI CTAG 5 cut(s) 27, 168, 572, 758, 1001
SstI GAGCTC 2 cut(s) 746, 969
StyD4I CCNGG 1 cut(s) 762
TaaI ACNGT 3 cut(s) 367, 728, 797
TaiI ACGT 2 cut(s) 107, 118
TaqI TCGA 2 cut(s) 41, 110
TasI AATT 7 cut(s) 67, 271, 380, 463, 545, 604, 902
TatI WGTACW 1 cut(s) 930
TfiI GAWTC 4 cut(s) 338, 473, 680, 1004
Tru1I TTAA 3 cut(s) 98, 270, 384
Tru9I TTAA 3 cut(s) 98, 270, 384
TscAI CASTG 3 cut(s) 615, 731, 978
TseFI GTSAC 1 cut(s) 361
TseI GCWGC 4 cut(s) 649, 659, 937, 991
Tsp45I GTSAC 1 cut(s) 361
TspDTI ATGAA 2 cut(s) 17, 320
TspRI CASTG 3 cut(s) 615, 731, 978
Van91I CCANNNNNTGG 1 cut(s) 774
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 604
XceI RCATGY 2 cut(s) 223, 740
XspI CTAG 5 cut(s) 27, 168, 572, 758, 1001
ZrmI AGTACT 1 cut(s) 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.