Rroxscaffold_2G00086020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000274
Physical Location & Seq
Reverse (-)
8290212 .. 8291220
1009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086020.1

Sequence Viewer

Length: 285 bp
ATGGATGAACCAATAGCAAGCAATTGCATTGAATGTTATGGAATTCTCTTGATCGATCGACCGTTGGAGAAACAATCTCAAGACTTGGATGTCCCAACTTTTATGAATCCCTTATGCCGATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAAGAGAGGGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCGAAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.93

Weight (kDa)

6.81

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 89
AciI CCGC 1 cut(s) 129
AcsI RAATTY 3 cut(s) 42, 159, 211
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 2 cut(s) 32, 211
AluBI AGCT 3 cut(s) 190, 221, 258
AluI AGCT 3 cut(s) 190, 221, 258
Alw21I GWGCWC 1 cut(s) 223
ApoI RAATTY 3 cut(s) 42, 159, 211
AsuII TTCGAA 1 cut(s) 164
BanII GRGCYC 1 cut(s) 223
Bbv12I GWGCWC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BmiI GGNNCC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 63
Bsa29I ATCGAT 1 cut(s) 54
BseCI ATCGAT 1 cut(s) 54
BseGI GGATG 3 cut(s) 10, 94, 205
Bsh1285I CGRYCG 2 cut(s) 58, 62
BshVI ATCGAT 1 cut(s) 54
BsiEI CGRYCG 2 cut(s) 58, 62
BsiHKAI GWGCWC 1 cut(s) 223
BslFI GGGAC 1 cut(s) 77
BsmFI GGGAC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 144
Bsp143I GATC 2 cut(s) 51, 55
BspACI CCGC 1 cut(s) 129
BspDI ATCGAT 1 cut(s) 54
BspLI GGNNCC 1 cut(s) 180
BspT104I TTCGAA 1 cut(s) 164
BsrGI TGTACA 1 cut(s) 144
BssMI GATC 2 cut(s) 51, 55
Bst4CI ACNGT 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 19
BstF5I GGATG 3 cut(s) 10, 94, 205
BstKTI GATC 2 cut(s) 54, 58
BstMBI GATC 2 cut(s) 51, 55
BstMCI CGRYCG 2 cut(s) 58, 62
Bsu15I ATCGAT 1 cut(s) 54
BsuTUI ATCGAT 1 cut(s) 54
BtsCI GGATG 3 cut(s) 10, 94, 205
Cac8I GCNNGC 1 cut(s) 19
ClaI ATCGAT 1 cut(s) 54
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 224, 272
CviJI RGCY 3 cut(s) 190, 221, 258
CviKI_1 RGCY 3 cut(s) 190, 221, 258
CviQI GTAC 1 cut(s) 145
DpnI GATC 2 cut(s) 53, 57
DpnII GATC 2 cut(s) 51, 55
DrdI GACNNNNNNGTC 1 cut(s) 89
DseDI GACNNNNNNGTC 1 cut(s) 89
Ecl136II GAGCTC 1 cut(s) 221
Eco24I GRGCYC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 221
EcoICRI GAGCTC 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 223
FaeI CATG 2 cut(s) 227, 275
FaiI YATR 5 cut(s) 39, 104, 115, 225, 273
FaqI GGGAC 1 cut(s) 77
FatI CATG 2 cut(s) 223, 271
FokI GGATG 3 cut(s) 17, 101, 212
FriOI GRGCYC 1 cut(s) 223
Hin1II CATG 2 cut(s) 227, 275
HinfI GANTC 2 cut(s) 106, 278
Hpy166II GTNNAC 1 cut(s) 147
Hpy188III TCNNGA 2 cut(s) 49, 80
Hpy8I GTNNAC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 27
Hsp92II CATG 2 cut(s) 227, 275
Kzo9I GATC 2 cut(s) 51, 55
LpnPI CCDG 1 cut(s) 244
MalI GATC 2 cut(s) 53, 57
MboI GATC 2 cut(s) 51, 55
MfeI CAATTG 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 223
MluCI AATT 4 cut(s) 22, 42, 159, 211
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 1 cut(s) 168
MspA1I CMGCKG 1 cut(s) 258
MunI CAATTG 1 cut(s) 22
NdeII GATC 2 cut(s) 51, 55
NlaIII CATG 2 cut(s) 227, 275
NlaIV GGNNCC 1 cut(s) 180
NspV TTCGAA 1 cut(s) 164
PfeI GAWTC 2 cut(s) 106, 278
Ple19I CGATCG 1 cut(s) 58
Psp124BI GAGCTC 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 180
PvuI CGATCG 1 cut(s) 58
PvuII CAGCTG 1 cut(s) 258
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 223
Sau3AI GATC 2 cut(s) 51, 55
SduI GDGCHC 1 cut(s) 223
SetI ASST 3 cut(s) 192, 223, 260
SfuI TTCGAA 1 cut(s) 164
SgeI CNNG 6 cut(s) 30, 61, 92, 97, 236, 271
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 4 cut(s) 22, 42, 159, 211
SsiI CCGC 1 cut(s) 129
SstI GAGCTC 1 cut(s) 223
TaaI ACNGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 54, 58, 164
TasI AATT 4 cut(s) 22, 42, 159, 211
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 2 cut(s) 106, 278
TspDTI ATGAA 2 cut(s) 21, 119
XapI RAATTY 3 cut(s) 42, 159, 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.