Rroxscaffold_3G00231570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000274
Physical Location & Seq
Forward (+)
16828147 .. 16839977
11831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00231570.1

Sequence Viewer

Length: 588 bp
ATGGCAAGTGATGAGAACTCAAAGACAACCCTCGGCAAGGAGAAGTCATCCAAAAGGACCTCACTTCCACGCAATCAATCCTCAACAACTCATCGAGTTAAATCGGAGATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAGAGAGAGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCGGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCCGTGCCGCTGCACCGCGATCTGCGGCGTTCCGCGCTGCACGACAACAAACAAAGAACTGAAGATGAAGAAGAATCTAATGAAGAACAAGTCTGCAGTAAGAAGAAGAATAAGGATAAAAAGGAGAAAACTAAAAAGGAGAAAAGAAGAAACAGCAAAGAAACTGAAGATGAAGAAGAAGTTCGTGCAAAGAAGAAGAAGAAAATGGATAAAAGGAAGACAAAAAAAGAGAGTGCAAAGAAGAAGGAAGAAACGACGAGGAAGAAGATACAAAAGATGATGAAGAGGAAAAAGTCCCAGCGAAAAGAAAAAGATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

23.21

Weight (kDa)

10.0

Isoelectric Point (pI)

64.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 285, 302
AciI CCGC 6 cut(s) 118, 230, 275, 283, 292, 300
AcsI RAATTY 2 cut(s) 148, 199
AcuI CTGAAG 2 cut(s) 348, 453
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 37
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 3 cut(s) 178, 209, 246
AluI AGCT 3 cut(s) 178, 209, 246
Alw21I GWGCWC 1 cut(s) 211
ApeKI GCWGC 2 cut(s) 277, 304
ApoI RAATTY 2 cut(s) 148, 199
Asp700I GAANNNNTTC 1 cut(s) 447
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 153
AvaII GGWCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 2 cut(s) 264, 291
BfmI CTRYAG 1 cut(s) 361
BisI GCNGC 4 cut(s) 275, 278, 293, 305
BlsI GCNGC 4 cut(s) 276, 279, 294, 306
Bme18I GGWCC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 37
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 47, 193
BseLI CCNNNNNNNGG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 264, 291
BseYI CCCAGC 1 cut(s) 564
BsgI GTGCAG 2 cut(s) 263, 290
Bsh1236I CGCG 2 cut(s) 285, 302
BsiHKAI GWGCWC 1 cut(s) 211
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 547
Bsp119I TTCGAA 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 211
Bsp1407I TGTACA 1 cut(s) 133
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 6 cut(s) 118, 230, 275, 283, 292, 300
BspFNI CGCG 2 cut(s) 285, 302
BspMAI CTGCAG 1 cut(s) 365
BspT104I TTCGAA 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 545
BstAUI TGTACA 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 153
BstENI CCTNNNNNAGG 1 cut(s) 35
BstF5I GGATG 2 cut(s) 47, 193
BstFNI CGCG 2 cut(s) 285, 302
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 361
BstUI CGCG 2 cut(s) 285, 302
BstV1I GCAGC 2 cut(s) 264, 291
BstV2I GAAGAC 1 cut(s) 491
BtsCI GGATG 2 cut(s) 47, 193
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 134
CviAII CATG 2 cut(s) 212, 260
CviJI RGCY 3 cut(s) 178, 209, 246
CviKI_1 RGCY 3 cut(s) 178, 209, 246
CviQI GTAC 1 cut(s) 134
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 545
EarI CTCTTC 1 cut(s) 545
Ecl136II GAGCTC 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 211
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 1 cut(s) 209
Eco57I CTGAAG 2 cut(s) 348, 453
EcoICRI GAGCTC 1 cut(s) 209
EcoNI CCTNNNNNAGG 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 2 cut(s) 215, 263
FaiI YATR 3 cut(s) 213, 261, 584
FaqI GGGAC 1 cut(s) 547
FatI CATG 2 cut(s) 211, 259
Fnu4HI GCNGC 4 cut(s) 275, 278, 293, 305
FokI GGATG 2 cut(s) 34, 200
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 4 cut(s) 275, 278, 293, 305
GlaI GCGC 1 cut(s) 303
GluI GCNGC 4 cut(s) 275, 278, 293, 305
GsaI CCCAGC 1 cut(s) 568
HhaI GCGC 1 cut(s) 304
Hin1II CATG 2 cut(s) 215, 263
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 2 cut(s) 266, 341
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 526
HpyAV CCTTC 1 cut(s) 505
HpyCH4V TGCA 5 cut(s) 280, 307, 363, 455, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
Hsp92II CATG 2 cut(s) 215, 263
HspAI GCGC 1 cut(s) 302
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 2 cut(s) 232, 578
Lsp1109I GCAGC 2 cut(s) 264, 291
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 2 cut(s) 148, 199
MnlI CCTC 5 cut(s) 41, 70, 91, 519, 546
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 246, 277
MvnI CGCG 2 cut(s) 285, 302
MwoI GCNNNNNNNGC 1 cut(s) 301
NdeII GATC 1 cut(s) 286
NlaIII CATG 2 cut(s) 215, 263
NmeAIII GCCGAG 1 cut(s) 12
NspV TTCGAA 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 266, 341
PkrI GCNGC 4 cut(s) 276, 279, 294, 306
PpuMI RGGWCCY 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 211
Psp5II RGGWCCY 1 cut(s) 57
PspFI CCCAGC 1 cut(s) 564
PspPI GGNCC 1 cut(s) 57
PspPPI RGGWCCY 1 cut(s) 57
PstI CTGCAG 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 246
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 99
SatI GCNGC 4 cut(s) 275, 278, 293, 305
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 57
SduI GDGCHC 1 cut(s) 211
SetI ASST 4 cut(s) 62, 180, 211, 248
SfcI CTRYAG 1 cut(s) 361
SfuI TTCGAA 1 cut(s) 153
SinI GGWCC 1 cut(s) 57
Sse9I AATT 2 cut(s) 148, 199
SsiI CCGC 6 cut(s) 118, 230, 275, 283, 292, 300
SstI GAGCTC 1 cut(s) 211
TaqI TCGA 2 cut(s) 94, 153
TasI AATT 2 cut(s) 148, 199
TatI WGTACW 1 cut(s) 133
TauI GCSGC 2 cut(s) 277, 295
TfiI GAWTC 2 cut(s) 266, 341
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TseI GCWGC 2 cut(s) 277, 304
TspDTI ATGAA 5 cut(s) 276, 348, 363, 453, 563
TspGWI ACGGA 1 cut(s) 259
VpaK11BI GGWCC 1 cut(s) 57
XagI CCTNNNNNAGG 1 cut(s) 35
XapI RAATTY 2 cut(s) 148, 199
XmnI GAANNNNTTC 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.