Rroxscaffold_5G00349810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000274
Physical Location & Seq
Reverse (-)
23078829 .. 23082722
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349810.1

Sequence Viewer

Length: 687 bp
ATGGCAGTGACAGAACTCAAAGACAACCCTCGGCAAGGAGAAGATTCATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAAGAGAGGGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCGAATCCGAAGAAGAACAATCGAAGAACAAAGTCCGAAGAAACAATTGGCGAAAAGTTGAAACTGATAAAATGGAAGAAAGTAAAAGAGGGAAAAAAGCAAAAGCAGAAAACTGAAGATGAAGAAGAATCAAGTGAATATGAGGAAGGAACAACTGAAGATGAAGAAGAATCGATGAAGAACAAGTCCGGGATCTTGGTTTTGCCACAAGACGGGAGTAGTGCCGCCAATCTCGGAAGAGAAACGAGAAAAACACGGAATAAGAAAGTGGCAATTAAAGACCACGATAGAAAAAAAAGGGGATTTCAACACCATGGGAAGTTGAAGAAAATATTTGATAAAGTTAAAGAAGATGCAGAGGAAGAAGATTCTAAGTCTAATGCGGACACGAAAAGTAAAGAAAAAATGAAAGTTGGGCAAGAAGAAAATGTTGAAAATAGAACCGGTGAAAACATGCTTGAAGGAGACTGCATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

26.38

Weight (kDa)

8.28

Isoelectric Point (pI)

47.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 432, 590
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 2 cut(s) 87, 139
AcuI CTGAAG 2 cut(s) 342, 384
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 35, 419
AgeI ACCGGT 1 cut(s) 650
AgsI TTSAA 6 cut(s) 139, 268, 515, 532, 641, 668
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AluBI AGCT 3 cut(s) 118, 149, 186
AluI AGCT 3 cut(s) 118, 149, 186
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 1 cut(s) 407
ApoI RAATTY 2 cut(s) 87, 139
AsiGI ACCGGT 1 cut(s) 650
AsuC2I CCSGG 1 cut(s) 397
AsuHPI GGTGA 1 cut(s) 665
AsuII TTCGAA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 666
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 397
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 550
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 29, 520
BsaWI WCCGGW 1 cut(s) 650
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 419
Bse118I RCCGGY 1 cut(s) 650
BseCI ATCGAT 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 29, 520
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 35, 419
BshTI ACCGGT 1 cut(s) 650
BshVI ATCGAT 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 396, 651
BslI CCNNNNNNNGG 2 cut(s) 35, 419
BsmAI GTCTC 1 cut(s) 666
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 72
Bsp143I GATC 1 cut(s) 399
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 3 cut(s) 57, 432, 590
BspDI ATCGAT 1 cut(s) 380
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 650
BsrGI TGTACA 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 650
BssECI CCNNGG 2 cut(s) 29, 520
BssMI GATC 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 520
Bst6I CTCTTC 1 cut(s) 439
BstAUI TGTACA 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 92
BstDEI CTNAG 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 520
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 402
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 1 cut(s) 399
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 399
BstYI RGATCY 1 cut(s) 399
Bsu15I ATCGAT 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 380
BtgI CCRYGG 1 cut(s) 520
BtsCI GGATG 1 cut(s) 133
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 650
ClaI ATCGAT 1 cut(s) 380
Csp6I GTAC 1 cut(s) 73
CspAI ACCGGT 1 cut(s) 650
CviAII CATG 5 cut(s) 152, 200, 521, 661, 679
CviJI RGCY 3 cut(s) 118, 149, 186
CviKI_1 RGCY 3 cut(s) 118, 149, 186
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 1 cut(s) 579
DpnI GATC 1 cut(s) 401
DpnII GATC 1 cut(s) 399
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Ecl136II GAGCTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 2 cut(s) 342, 384
EcoICRI GAGCTC 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 520
EcoT38I GRGCYC 1 cut(s) 151
ErhI CCWWGG 1 cut(s) 520
FaeI CATG 5 cut(s) 155, 203, 524, 664, 682
FaiI YATR 6 cut(s) 153, 201, 348, 522, 662, 680
FatI CATG 5 cut(s) 151, 199, 520, 660, 678
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 432
GluI GCNGC 1 cut(s) 432
HapII CCGG 2 cut(s) 396, 651
Hin1II CATG 5 cut(s) 155, 203, 524, 664, 682
HinfI GANTC 6 cut(s) 44, 206, 211, 335, 377, 575
HpaII CCGG 2 cut(s) 396, 651
HphI GGTGA 1 cut(s) 665
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 3 cut(s) 216, 244, 443
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 2 cut(s) 347, 662
HpyCH4V TGCA 3 cut(s) 170, 563, 678
HpyF3I CTNAG 1 cut(s) 579
Hsp92II CATG 5 cut(s) 155, 203, 524, 664, 682
Kzo9I GATC 1 cut(s) 399
LpnPI CCDG 3 cut(s) 172, 409, 664
LweI GCATC 1 cut(s) 550
MaeIII GTNAC 1 cut(s) 7
MalI GATC 1 cut(s) 401
MboI GATC 1 cut(s) 399
MfeI CAATTG 1 cut(s) 252
MflI RGATCY 1 cut(s) 399
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 4 cut(s) 87, 139, 252, 480
MnlI CCTC 5 cut(s) 39, 96, 289, 343, 559
MseI TTAA 2 cut(s) 483, 552
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 2 cut(s) 396, 651
MspR9I CCNGG 1 cut(s) 397
MunI CAATTG 1 cut(s) 252
NciI CCSGG 1 cut(s) 397
NcoI CCATGG 1 cut(s) 520
NdeII GATC 1 cut(s) 399
NlaIII CATG 5 cut(s) 155, 203, 524, 664, 682
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 7
NspI RCATGY 1 cut(s) 664
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 6 cut(s) 44, 206, 211, 335, 377, 575
PfoI TCCNGGA 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 650
PkrI GCNGC 1 cut(s) 433
Psp124BI GAGCTC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 399
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 483, 552
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 120, 151, 188
SfaNI GCATC 1 cut(s) 550
SfuI TTCGAA 1 cut(s) 92
Sse9I AATT 4 cut(s) 87, 139, 252, 480
SsiI CCGC 3 cut(s) 57, 432, 590
SspI AATATT 1 cut(s) 540
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 395
StyI CCWWGG 1 cut(s) 520
TaqI TCGA 4 cut(s) 92, 209, 229, 380
TasI AATT 4 cut(s) 87, 139, 252, 480
TatI WGTACW 1 cut(s) 72
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 6 cut(s) 44, 206, 211, 335, 377, 575
Tru1I TTAA 2 cut(s) 483, 552
Tru9I TTAA 2 cut(s) 483, 552
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 7
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 6 cut(s) 36, 216, 342, 384, 398, 629
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 2 cut(s) 87, 139
XceI RCATGY 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.