Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000274

Physical Location & Seq

Genomic Coordinates Reverse (-)

63347368 .. 63351730

Gene Structure 4363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG472000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATTCGTTCTTGCGTGCGCTTAATTGATCTTGCCAAGGCATTCTTCTGGTCGAGAATGGTATTCTGTCAAATTCCTGCAATTGATTCGTTGATGATGGCCCACGGAAAAGTCAGTCTCGCTCAAGAACTCCTCCCCTCGCCGATCTTCTCCGCTACCAAAGACTCGGAGATGGCACAGAGGGAAGAGTTCGAGATGAGCGTCGCAGGATCTGGAGAGGTGGAGCCTTCGATCAGTCAGATCCTTGGAAAGATTGACAGGCTGAAGAATCAGGTTGGTCGCTCTCTTCCGCAAGATCGTCCCTCCACTCACCAAGTACTCGCCGGAGACCATTATGCTGATTGTGTTGAATCTGGTACGAATCTGGAGATGGTGAGTTCGAAATCGGCGACCACCGGAGAAAGTATTCCTTGCGATTTCTGCAATGAGCAGGCTGTGATGTTGTACTGTAAGGCCCACAAGCTTCGGAAGATATCTGAACTCTTCCTTTATACTCAGCGATCTTCGTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

171

Amino Acids

19.01

Weight (kDa)

6.08

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000274)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis	pycom02g10120
rosa_chinensis	RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata	RLG00000015279 RLG00000029539
rosa_multiflora	Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii	Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa	Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha	Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	153, 290
AclWI	GGATC	2 cut(s)	217, 235
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	3 cut(s)	318, 358, 446
AgsI	TTSAA	1 cut(s)	350
AjuI	GAANNNNNNNTTGG	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	463
AluI	AGCT	1 cut(s)	463
Alw26I	GTCTC	2 cut(s)	122, 321
AlwI	GGATC	2 cut(s)	217, 235
AlwNI	CAGNNNCTG	1 cut(s)	212
AoxI	GGCC	2 cut(s)	99, 453
ApoI	RAATTY	1 cut(s)	72
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	100, 454
AsuHPI	GGTGA	2 cut(s)	302, 385
AsuII	TTCGAA	1 cut(s)	380
BccI	CCATC	3 cut(s)	91, 166, 364
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BcoDI	GTCTC	2 cut(s)	122, 321
BmcAI	AGTACT	1 cut(s)	318
BmgT120I	GGNCC	2 cut(s)	100, 454
BmiI	GGNNCC	1 cut(s)	225
BpmI	CTGGAG	2 cut(s)	234, 386
Bpu14I	TTCGAA	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	36, 103, 244
BsaWI	WCCGGW	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	430
BseDI	CCNNGG	3 cut(s)	36, 103, 244
BseMI	GCAATG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	509
BseRI	GAGGAG	1 cut(s)	122
BshFI	GGCC	2 cut(s)	101, 455
BsiSI	CCGG	2 cut(s)	324, 396
BslFI	GGGAC	1 cut(s)	285
BsmAI	GTCTC	2 cut(s)	122, 321
BsmFI	GGGAC	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	101, 455
Bso31I	GGTCTC	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	380
Bsp143I	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
BspACI	CCGC	2 cut(s)	153, 290
BspANI	GGCC	2 cut(s)	101, 455
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	217, 235
BspT104I	TTCGAA	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	430
BssECI	CCNNGG	3 cut(s)	36, 103, 244
BssMI	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
BssT1I	CCWWGG	2 cut(s)	36, 244
Bst4CI	ACNGT	1 cut(s)	449
Bst6I	CTCTTC	3 cut(s)	180, 291, 488
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	17, 432
BstDEI	CTNAG	1 cut(s)	495
BstDSI	CCRYGG	1 cut(s)	103
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	8 cut(s)	31, 147, 212, 234, 243, 298, 503, 513
BstMAI	GTCTC	2 cut(s)	122, 321
BstMBI	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	209, 240
BstYI	RGATCY	2 cut(s)	209, 240
BsuRI	GGCC	2 cut(s)	101, 455
BtgI	CCRYGG	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	17, 432
CaiI	CAGNNNCTG	1 cut(s)	212
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	100, 454
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	317, 357, 445
CviJI	RGCY	6 cut(s)	101, 226, 262, 434, 455, 463
CviKI_1	RGCY	6 cut(s)	101, 226, 262, 434, 455, 463
CviQI	GTAC	3 cut(s)	317, 357, 445
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	8 cut(s)	30, 146, 211, 233, 242, 297, 502, 512
DpnII	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
Eam1104I	CTCTTC	3 cut(s)	180, 291, 488
EarI	CTCTTC	3 cut(s)	180, 291, 488
Eco130I	CCWWGG	2 cut(s)	36, 244
Eco31I	GGTCTC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	2 cut(s)	36, 244
ErhI	CCWWGG	2 cut(s)	36, 244
FaiI	YATR	2 cut(s)	336, 492
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 394, 426
FaqI	GGGAC	1 cut(s)	285
GlaI	GCGC	1 cut(s)	20
GsuI	CTGGAG	2 cut(s)	234, 386
HaeIII	GGCC	2 cut(s)	101, 455
HapII	CCGG	2 cut(s)	324, 396
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	21
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	6 cut(s)	4, 86, 164, 268, 350, 361
HpaII	CCGG	2 cut(s)	324, 396
HphI	GGTGA	2 cut(s)	302, 385
Hpy188I	TCNGA	5 cut(s)	169, 240, 468, 478, 515
Hpy188III	TCNNGA	5 cut(s)	54, 125, 193, 213, 365
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	2 cut(s)	80, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	420
HpyF3I	CTNAG	1 cut(s)	495
HspAI	GCGC	1 cut(s)	19
Kzo9I	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
LmnI	GCTCC	1 cut(s)	223
MalI	GATC	8 cut(s)	30, 146, 211, 233, 242, 297, 502, 512
MboI	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
MboII	GAAGA	8 cut(s)	37, 139, 197, 277, 278, 475, 481, 495
MfeI	CAATTG	1 cut(s)	81
MflI	RGATCY	2 cut(s)	209, 240
MluCI	AATT	3 cut(s)	24, 72, 81
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	5 cut(s)	143, 148, 174, 211, 313
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	23
MspI	CCGG	2 cut(s)	324, 396
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	420
NdeII	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
NlaIV	GGNNCC	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	380
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 386
PctI	GAATGC	1 cut(s)	41
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	5 cut(s)	4, 86, 268, 350, 361
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	100, 454
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	2 cut(s)	209, 240
RsaI	GTAC	3 cut(s)	318, 358, 446
RsaNI	GTAC	3 cut(s)	317, 357, 445
SaqAI	TTAA	1 cut(s)	23
Sau3AI	GATC	8 cut(s)	28, 144, 209, 231, 240, 295, 500, 510
Sau96I	GGNCC	2 cut(s)	100, 454
ScaI	AGTACT	1 cut(s)	318
SchI	GAGTC	1 cut(s)	158
SetI	ASST	3 cut(s)	222, 276, 465
SfuI	TTCGAA	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	3 cut(s)	24, 72, 81
SsiI	CCGC	2 cut(s)	153, 290
StyI	CCWWGG	2 cut(s)	36, 244
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	4 cut(s)	53, 192, 230, 380
TasI	AATT	3 cut(s)	24, 72, 81
TatI	WGTACW	2 cut(s)	316, 444
TfiI	GAWTC	5 cut(s)	4, 86, 268, 350, 361
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	120
XapI	RAATTY	1 cut(s)	72
XmnI	GAANNNNTTC	1 cut(s)	405
ZrmI	AGTACT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.