Rroxscaffold_4G00277040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000274
Physical Location & Seq
Forward (+)
505496 .. 508422
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277040.1

Sequence Viewer

Length: 504 bp
ATGGGGCACGAGGTTTCAAGACGGGATTTAAAAGACATGATCATGGATGAACCGATAGCAAGCAATTGCATCGAATGTTATGGAATTCTCTCGACCGATCAGCCGTTGGAGAAACAATCTCAAGACTTGGATGTCCCAACTTTTATGAATCCCTTATGCTGGATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAGAGAGGGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTCAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCAAGAACAATCGAAGAACAAAGTCCAAGAAACAATTGGGGAAAAGTTGAAACCGATAAAATGGAAGAAAGTAAAAGAGGGAAAAAGCAAAAGCAGAAAACTGAAGATGAAGAAGAATCAAGTGAATATGAGGAAGGAACAACTGAAGATGAAGAAGAATCGATGAAGAACAAGTCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

19.47

Weight (kDa)

4.96

Isoelectric Point (pI)

77.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AciI CCGC 1 cut(s) 172
AcsI RAATTY 3 cut(s) 84, 202, 253
AcuI CTGAAG 2 cut(s) 444, 486
AfaI GTAC 1 cut(s) 189
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 3 cut(s) 18, 253, 371
AluBI AGCT 3 cut(s) 232, 263, 300
AluI AGCT 3 cut(s) 232, 263, 300
Alw21I GWGCWC 1 cut(s) 265
ApoI RAATTY 3 cut(s) 84, 202, 253
AsuC2I CCSGG 1 cut(s) 499
AsuII TTCGAA 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 265
BauI CACGAG 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 265
BceAI ACGGC 1 cut(s) 88
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BclI TGATCA 1 cut(s) 39
BcnI CCSGG 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 499
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 499
BmsI GCATC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 499
Bsa29I ATCGAT 1 cut(s) 482
Bsc4I CCNNNNNNNGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 482
BseGI GGATG 3 cut(s) 52, 136, 247
BseLI CCNNNNNNNGG 1 cut(s) 159
BseSI GKGCMC 1 cut(s) 9
Bsh1285I CGRYCG 1 cut(s) 96
BshVI ATCGAT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 498
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 159
BsmFI GGGAC 1 cut(s) 119
Bsp119I TTCGAA 1 cut(s) 207
Bsp1286I GDGCHC 2 cut(s) 9, 265
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 2 cut(s) 39, 97
BspACI CCGC 1 cut(s) 172
BspDI ATCGAT 1 cut(s) 482
BspLI GGNNCC 1 cut(s) 222
BspT104I TTCGAA 1 cut(s) 207
BsrGI TGTACA 1 cut(s) 187
BssMI GATC 2 cut(s) 39, 97
BssSI CACGAG 1 cut(s) 8
Bst2BI CACGAG 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 61
BstF5I GGATG 3 cut(s) 52, 136, 247
BstKTI GATC 2 cut(s) 42, 100
BstMBI GATC 2 cut(s) 39, 97
BstMCI CGRYCG 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 497
BstSLI GKGCMC 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 482
BsuTUI ATCGAT 1 cut(s) 482
BtsCI GGATG 3 cut(s) 52, 136, 247
Cac8I GCNNGC 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 482
Csp6I GTAC 1 cut(s) 188
CviAII CATG 4 cut(s) 37, 43, 266, 314
CviJI RGCY 4 cut(s) 103, 232, 263, 300
CviKI_1 RGCY 4 cut(s) 103, 232, 263, 300
CviQI GTAC 1 cut(s) 188
DpnI GATC 2 cut(s) 41, 99
DpnII GATC 2 cut(s) 39, 97
DraI TTTAAA 1 cut(s) 30
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 265
Eco53kI GAGCTC 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 444, 486
EcoICRI GAGCTC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 265
FaeI CATG 4 cut(s) 40, 46, 269, 317
FaiI YATR 8 cut(s) 38, 44, 81, 146, 157, 267, 315, 450
FaqI GGGAC 1 cut(s) 119
FatI CATG 4 cut(s) 36, 42, 265, 313
FbaI TGATCA 1 cut(s) 39
FokI GGATG 3 cut(s) 59, 143, 254
FriOI GRGCYC 1 cut(s) 265
HapII CCGG 1 cut(s) 498
Hin1II CATG 4 cut(s) 40, 46, 269, 317
HinfI GANTC 4 cut(s) 148, 320, 437, 479
HpaII CCGG 1 cut(s) 498
Hpy166II GTNNAC 1 cut(s) 190
Hpy188III TCNNGA 4 cut(s) 18, 91, 122, 324
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 1 cut(s) 449
HpyCH4V TGCA 2 cut(s) 69, 284
Hsp92II CATG 4 cut(s) 40, 46, 269, 317
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 97
LpnPI CCDG 2 cut(s) 145, 286
LweI GCATC 1 cut(s) 78
MalI GATC 2 cut(s) 41, 99
MboI GATC 2 cut(s) 39, 97
MfeI CAATTG 2 cut(s) 64, 355
MhlI GDGCHC 2 cut(s) 9, 265
MluCI AATT 5 cut(s) 64, 84, 202, 253, 355
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 4 cut(s) 4, 210, 392, 445
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 41
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 499
MunI CAATTG 2 cut(s) 64, 355
NciI CCSGG 1 cut(s) 499
NdeII GATC 2 cut(s) 39, 97
NlaIII CATG 4 cut(s) 40, 46, 269, 317
NlaIV GGNNCC 1 cut(s) 222
NspV TTCGAA 1 cut(s) 207
PfeI GAWTC 4 cut(s) 148, 320, 437, 479
Psp124BI GAGCTC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 222
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 1 cut(s) 189
RsaNI GTAC 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 41
SacI GAGCTC 1 cut(s) 265
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 39, 97
ScrFI CCNGG 1 cut(s) 499
SduI GDGCHC 2 cut(s) 9, 265
SetI ASST 4 cut(s) 15, 234, 265, 302
SfaNI GCATC 1 cut(s) 78
SfuI TTCGAA 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 120
SmoI CTYRAG 1 cut(s) 120
Sse9I AATT 5 cut(s) 64, 84, 202, 253, 355
SsiI CCGC 1 cut(s) 172
SstI GAGCTC 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 497
TaqI TCGA 5 cut(s) 72, 92, 207, 333, 482
TaqII GACCGA 1 cut(s) 110
TasI AATT 5 cut(s) 64, 84, 202, 253, 355
TatI WGTACW 1 cut(s) 187
TfiI GAWTC 4 cut(s) 148, 320, 437, 479
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TspDTI ATGAA 6 cut(s) 63, 161, 330, 444, 486, 500
XapI RAATTY 3 cut(s) 84, 202, 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.