FvH4_6g06051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Reverse (-)
3450443 .. 3453613
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06051.t1

Sequence Viewer

Length: 615 bp
ATGCCCGCAAGAAGAGCTAGTATATACTGGTGGGGGGAGGTTAAACAGAGCAGAGAAAAGAAGGCCAAAGAAAAAGCAGAAGAAAGAAAGAAAAATCATGAGCAGAAGAGGAAGAACAAGATAGGAGAAAAAGATGAACTGACAGAGTATGGAGACGTAATTCATACCATCGGTGATGATGAGATGCAACCCATGCCGATACAGATTGTGACTACCAACGCGAAGCCAATACAGACTATGACTAAGAAGGCGATTTGGACAAGTTTCAAAGCATTCAAGTGTATGGAACCATTGACAAAGAAAAAATGGAAAACTTGTTGGGACCACATAGATGACGGAGACTTCCTATGGGAAGGCCAATTGTTTGGGTCAGAGATTACAAAGCTTGATTTGGGGGAGGTTATAATGGACAAACCAGTGGCATGCAATGCAACTATGGTTGATTTATGGATGGCCGCAGTTAAAGAGCAAACAGATGACATGCTGAAGAAAGGGTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAATTTGGTAGCAGCGGAAAGAGTCGTTTCTGTCATTAGTCTGGATGAAGAGGAGAGTGATATAGAGATCCAATTGACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.61

Weight (kDa)

6.04

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AccII CGCG 1 cut(s) 221
AciI CCGC 4 cut(s) 6, 456, 499, 548
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 453
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 506
AgsI TTSAA 2 cut(s) 268, 277
AluBI AGCT 2 cut(s) 17, 385
AluI AGCT 2 cut(s) 17, 385
Alw26I GTCTC 2 cut(s) 147, 333
AlwI GGATC 1 cut(s) 595
AoxI GGCC 3 cut(s) 63, 355, 453
ApeKI GCWGC 1 cut(s) 545
ApoI RAATTY 1 cut(s) 535
AspS9I GGNCC 2 cut(s) 322, 495
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 2 cut(s) 322, 495
BbvI GCAGC 1 cut(s) 557
BccI CCATC 2 cut(s) 176, 445
BcoDI GTCTC 2 cut(s) 147, 333
BfaI CTAG 1 cut(s) 18
BisI GCNGC 2 cut(s) 456, 546
BlsI GCNGC 2 cut(s) 457, 547
Bme18I GGWCC 2 cut(s) 322, 495
BmgT120I GGNCC 2 cut(s) 322, 495
BmiI GGNNCC 4 cut(s) 288, 323, 496, 497
BmsI GCATC 1 cut(s) 174
Bse1I ACTGG 2 cut(s) 32, 416
Bse3DI GCAATG 1 cut(s) 433
BseGI GGATG 2 cut(s) 456, 583
BseMI GCAATG 1 cut(s) 433
BseNI ACTGG 2 cut(s) 32, 416
BseRI GAGGAG 1 cut(s) 599
BseXI GCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 3 cut(s) 65, 357, 455
BslFI GGGAC 2 cut(s) 335, 481
BsmAI GTCTC 2 cut(s) 147, 333
BsmBI CGTCTC 1 cut(s) 147
BsmFI GGGAC 2 cut(s) 335, 481
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 3 cut(s) 65, 357, 455
Bsp143I GATC 1 cut(s) 600
BspACI CCGC 4 cut(s) 6, 456, 499, 548
BspANI GGCC 3 cut(s) 65, 357, 455
BspFNI CGCG 1 cut(s) 221
BspHI TCATGA 1 cut(s) 97
BspLI GGNNCC 4 cut(s) 288, 323, 496, 497
BspPI GGATC 1 cut(s) 595
BspQI GCTCTTC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 433
BsrI ACTGG 2 cut(s) 32, 416
BssMI GATC 1 cut(s) 600
Bst6I CTCTTC 3 cut(s) 7, 101, 576
BstAPI GCANNNNNTGC 2 cut(s) 193, 428
BstC8I GCNNGC 2 cut(s) 6, 424
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 456, 583
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 2 cut(s) 147, 333
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 3 cut(s) 14, 193, 428
BstNSI RCATGY 2 cut(s) 426, 484
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 557
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 365
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 3 cut(s) 65, 357, 455
BtsCI GGATG 2 cut(s) 456, 583
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 2 cut(s) 6, 424
CciI TCATGA 1 cut(s) 97
Cfr13I GGNCC 2 cut(s) 322, 495
CviAII CATG 5 cut(s) 98, 193, 423, 481, 514
CviJI RGCY 6 cut(s) 17, 65, 226, 357, 385, 455
CviKI_1 RGCY 6 cut(s) 17, 65, 226, 357, 385, 455
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 453
Eam1104I CTCTTC 3 cut(s) 7, 101, 576
EarI CTCTTC 3 cut(s) 7, 101, 576
Eco47I GGWCC 2 cut(s) 322, 495
Eco57I CTGAAG 1 cut(s) 506
EcoO109I RGGNCCY 1 cut(s) 495
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 5 cut(s) 101, 196, 426, 484, 517
FaqI GGGAC 2 cut(s) 335, 481
FatI CATG 5 cut(s) 97, 192, 422, 480, 513
FauI CCCGC 2 cut(s) 13, 506
Fnu4HI GCNGC 2 cut(s) 456, 546
FokI GGATG 2 cut(s) 463, 590
Fsp4HI GCNGC 2 cut(s) 456, 546
FspBI CTAG 1 cut(s) 18
GluI GCNGC 2 cut(s) 456, 546
HaeIII GGCC 3 cut(s) 65, 357, 455
Hin1II CATG 5 cut(s) 101, 196, 426, 484, 517
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 1 cut(s) 555
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 373, 532
Hpy188III TCNNGA 2 cut(s) 98, 575
HpyAV CCTTC 3 cut(s) 55, 241, 347
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 3 cut(s) 187, 426, 431
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 193, 428
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 5 cut(s) 101, 196, 426, 484, 517
KflI GGGWCCC 1 cut(s) 495
Kzo9I GATC 1 cut(s) 600
LguI GCTCTTC 1 cut(s) 7
LmnI GCTCC 1 cut(s) 522
LpnPI CCDG 4 cut(s) 13, 429, 505, 560
Lsp1109I GCAGC 1 cut(s) 557
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 6 cut(s) 24, 92, 118, 124, 499, 593
MfeI CAATTG 2 cut(s) 359, 605
MflI RGATCY 1 cut(s) 600
MluCI AATT 4 cut(s) 159, 359, 535, 605
MlyI GAGTC 1 cut(s) 564
MnlI CCTC 4 cut(s) 31, 102, 391, 577
MseI TTAA 2 cut(s) 42, 462
MslI CAYNNNNRTG 2 cut(s) 277, 330
MspA1I CMGCKG 1 cut(s) 548
MunI CAATTG 2 cut(s) 359, 605
Mva1269I GAATGC 1 cut(s) 272
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 3 cut(s) 14, 193, 428
NdeII GATC 1 cut(s) 600
NlaIII CATG 5 cut(s) 101, 196, 426, 484, 517
NlaIV GGNNCC 4 cut(s) 288, 323, 496, 497
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 2 cut(s) 426, 484
PaeI GCATGC 1 cut(s) 426
PagI TCATGA 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 7
PctI GAATGC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 457, 547
PleI GAGTC 1 cut(s) 563
PpsI GAGTC 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 495
PsiI TTATAA 1 cut(s) 404
Psp5II RGGWCCY 1 cut(s) 495
PspN4I GGNNCC 4 cut(s) 288, 323, 496, 497
PspPI GGNCC 2 cut(s) 322, 495
PspPPI RGGWCCY 1 cut(s) 495
PsuI RGATCY 1 cut(s) 600
RseI CAYNNNNRTG 2 cut(s) 277, 330
SapI GCTCTTC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 42, 462
SatI GCNGC 2 cut(s) 456, 546
Sau3AI GATC 1 cut(s) 600
Sau96I GGNCC 2 cut(s) 322, 495
SchI GAGTC 1 cut(s) 564
SetI ASST 5 cut(s) 19, 42, 159, 387, 402
SfaNI GCATC 1 cut(s) 174
SinI GGWCC 2 cut(s) 322, 495
SmiMI CAYNNNNRTG 2 cut(s) 277, 330
SphI GCATGC 1 cut(s) 426
Sse9I AATT 4 cut(s) 159, 359, 535, 605
SsiI CCGC 4 cut(s) 6, 456, 499, 548
SspMI CTAG 1 cut(s) 18
TaiI ACGT 1 cut(s) 159
TasI AATT 4 cut(s) 159, 359, 535, 605
TauI GCSGC 1 cut(s) 458
Tru1I TTAA 2 cut(s) 42, 462
Tru9I TTAA 2 cut(s) 42, 462
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 545
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 4 cut(s) 150, 152, 530, 594
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 2 cut(s) 322, 495
XapI RAATTY 1 cut(s) 535
XceI RCATGY 2 cut(s) 426, 484
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.