RchiOBHm_Chr1g0358931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000274
Physical Location & Seq
Forward (+)
50914427 .. 50915037
611 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58401

Sequence Viewer

Length: 432 bp
ATGTTATGCAGCGTATTATTCTGGGAGGGAAAAGAGGCTGGAAGCGAAATCACAAGGGCAAATGTCAAAATGTTCATAAGCAATCAATCAATAGCAAACAACTGGATTGATTTCTATGGGGAAATGTTGAAGGATGAAATGCAAAACGAAAGTTCACAAAGTTTGGGAAGATCTGCTTTTATGCATAGCATGTGTTGGTATTCGACAATACATTTAACTGTGAGAAACCTCCATCAATACTTGTGTGAGCCGCTGTTCCAAAACATGGGAAAATGCAGCATGCTTTTCTTCCCAATTACCCATAATGAAGAATTTCACCACACGCTATTGGTCTTTGACAAGGACATACCGCAATGGCTGCATTTTGATTCAATGAAACCAAGAAGAGCAGGAACAGGGCAGTGCTTTAAAAGCATAAAAAAAATTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

16.72

Weight (kDa)

7.04

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AciI CCGC 2 cut(s) 251, 350
AcsI RAATTY 1 cut(s) 311
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 2 cut(s) 130, 372
ApeKI GCWGC 3 cut(s) 9, 276, 358
ApoI RAATTY 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 308
BbvI GCAGC 3 cut(s) 21, 288, 345
BccI CCATC 1 cut(s) 240
BglII AGATCT 1 cut(s) 170
BisI GCNGC 4 cut(s) 10, 251, 277, 359
BlsI GCNGC 4 cut(s) 11, 252, 278, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 359
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 21, 288, 345
BslI CCNNNNNNNGG 1 cut(s) 265
Bsp143I GATC 1 cut(s) 170
BspACI CCGC 2 cut(s) 251, 350
BspQI GCTCTTC 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 359
BsrI ACTGG 1 cut(s) 107
BssMI GATC 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 220
Bst6I CTCTTC 1 cut(s) 379
BstAPI GCANNNNNTGC 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 281
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 1 cut(s) 173
BstMBI GATC 1 cut(s) 170
BstMWI GCNNNNNNNGC 2 cut(s) 358, 411
BstNSI RCATGY 2 cut(s) 193, 283
BstV1I GCAGC 3 cut(s) 21, 288, 345
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BtsCI GGATG 1 cut(s) 139
BtsI GCAGTG 1 cut(s) 407
BtsIMutI CAGTG 1 cut(s) 407
Cac8I GCNNGC 1 cut(s) 281
CviAII CATG 3 cut(s) 190, 265, 280
CviJI RGCY 3 cut(s) 38, 250, 358
CviKI_1 RGCY 3 cut(s) 38, 250, 358
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
DraI TTTAAA 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 379
EarI CTCTTC 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 186
FaeI CATG 3 cut(s) 193, 268, 283
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FatI CATG 3 cut(s) 189, 264, 279
Fnu4HI GCNGC 4 cut(s) 10, 251, 277, 359
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 4 cut(s) 10, 251, 277, 359
GluI GCNGC 4 cut(s) 10, 251, 277, 359
Hin1II CATG 3 cut(s) 193, 268, 283
HinfI GANTC 1 cut(s) 368
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 155
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 1 cut(s) 220
HpyCH4V TGCA 5 cut(s) 9, 142, 184, 276, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 358, 411
Hsp92II CATG 3 cut(s) 193, 268, 283
Kzo9I GATC 1 cut(s) 170
LguI GCTCTTC 1 cut(s) 379
LpnPI CCDG 5 cut(s) 7, 24, 88, 375, 381
Lsp1109I GCAGC 3 cut(s) 21, 288, 345
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 4 cut(s) 180, 280, 320, 396
MflI RGATCY 1 cut(s) 170
MluCI AATT 3 cut(s) 294, 311, 423
MnlI CCTC 3 cut(s) 19, 28, 239
Mph1103I ATGCAT 1 cut(s) 186
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 2 cut(s) 215, 408
MspA1I CMGCKG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 358, 411
NdeII GATC 1 cut(s) 170
NlaIII CATG 3 cut(s) 193, 268, 283
NsiI ATGCAT 1 cut(s) 186
NspI RCATGY 2 cut(s) 193, 283
PaeI GCATGC 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 312
PfeI GAWTC 1 cut(s) 368
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 4 cut(s) 11, 252, 278, 360
PsuI RGATCY 1 cut(s) 170
SapI GCTCTTC 1 cut(s) 379
SaqAI TTAA 2 cut(s) 215, 408
SatI GCNGC 4 cut(s) 10, 251, 277, 359
Sau3AI GATC 1 cut(s) 170
SetI ASST 1 cut(s) 231
SphI GCATGC 1 cut(s) 283
Sse9I AATT 3 cut(s) 294, 311, 423
SsiI CCGC 2 cut(s) 251, 350
TaaI ACNGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 203
TasI AATT 3 cut(s) 294, 311, 423
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 2 cut(s) 215, 408
Tru9I TTAA 2 cut(s) 215, 408
TscAI CASTG 1 cut(s) 407
TseI GCWGC 3 cut(s) 9, 276, 358
TspDTI ATGAA 4 cut(s) 64, 150, 321, 389
TspRI CASTG 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 265
XapI RAATTY 1 cut(s) 311
XceI RCATGY 2 cut(s) 193, 283
XmnI GAANNNNTTC 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.