Rroxscaffold_5G00371400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000274
Physical Location & Seq
Reverse (-)
52973926 .. 52977368
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371400.1

Sequence Viewer

Length: 465 bp
ATGGGTCTCTACTCTTACGTTGTGAGATTAAAGAATAAGAAAAGAACACGAAAAAGGACAACATTTATGGTGGGGAGATGTGAAAGCAAAACGACGAAGAAAGCAAAGGAGATTGAAGAGAGATTGAAAGATGCCGAAAAGAAAGAAAAAGAAAAGAATTTGAAGGCCTCACCGCAAGATGCTGAACGTAAAAAGCTCGAACAGATGGTACCTTTTAAAGTAAGTAATCGGCTAAGTTTCGAGAAACCGAATGTCACCGGAAATGGCGACCTGAATGTCATAGACCAAGTCACTAGTCAAGTAACTCGAGAAAATTTCAGCGTTTTGTCATTGTTCAATGCCTTTGTCACTGCCCATGTCGCTGCACTAGTCACCGGCTATGATCATGTAATCGGTCATGTAACCGTGCATGTCACCGTTCATGTCACCGGCTATGATCATGTAACCGTGCATGTCACTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.54

Weight (kDa)

9.85

Isoelectric Point (pI)

20.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
Acc65I GGTACC 1 cut(s) 208
AccB1I GGYRCC 1 cut(s) 208
AciI CCGC 1 cut(s) 173
AcsI RAATTY 2 cut(s) 157, 313
AfaI GTAC 1 cut(s) 210
AgsI TTSAA 4 cut(s) 116, 127, 163, 337
AhlI ACTAGT 2 cut(s) 293, 367
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 11
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 2 cut(s) 157, 313
Asp718I GGTACC 1 cut(s) 208
AsuHPI GGTGA 5 cut(s) 162, 247, 364, 406, 418
AvaI CYCGRG 1 cut(s) 306
BanI GGYRCC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 199
BcgI CGANNNNNNTGC 1 cut(s) 440
BclI TGATCA 2 cut(s) 382, 436
BcoDI GTCTC 1 cut(s) 11
BcuI ACTAGT 2 cut(s) 293, 367
BfaI CTAG 2 cut(s) 294, 368
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmeT110I CYCGRG 1 cut(s) 306
BmiI GGNNCC 1 cut(s) 210
BmsI GCATC 2 cut(s) 121, 169
BsaI GGTCTC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 257
Bse118I RCCGGY 2 cut(s) 374, 428
BseXI GCAGC 1 cut(s) 349
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 167
BshNI GGYRCC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 3 cut(s) 258, 375, 429
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 11
BsoBI CYCGRG 1 cut(s) 306
Bsp143I GATC 2 cut(s) 382, 436
BspACI CCGC 1 cut(s) 173
BspANI GGCC 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 208
BspTNI GGTCTC 1 cut(s) 11
BsrFI RCCGGY 2 cut(s) 374, 428
BssAI RCCGGY 2 cut(s) 374, 428
BssMI GATC 2 cut(s) 382, 436
Bst4CI ACNGT 3 cut(s) 406, 418, 448
Bst6I CTCTTC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 233
BstKTI GATC 2 cut(s) 385, 439
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 382, 436
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 2 cut(s) 413, 455
BstV1I GCAGC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 167
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
Cfr10I RCCGGY 2 cut(s) 374, 428
Csp6I GTAC 1 cut(s) 209
CviAII CATG 7 cut(s) 356, 386, 398, 410, 422, 440, 452
CviJI RGCY 5 cut(s) 167, 196, 232, 378, 432
CviKI_1 RGCY 5 cut(s) 167, 196, 232, 378, 432
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 1 cut(s) 233
DpnI GATC 2 cut(s) 384, 438
DpnII GATC 2 cut(s) 382, 436
DraI TTTAAA 1 cut(s) 217
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco147I AGGCCT 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 11
Eco88I CYCGRG 1 cut(s) 306
FaeI CATG 7 cut(s) 359, 389, 401, 413, 425, 443, 455
FatI CATG 7 cut(s) 355, 385, 397, 409, 421, 439, 451
FbaI TGATCA 2 cut(s) 382, 436
Fnu4HI GCNGC 1 cut(s) 363
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 294, 368
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 1 cut(s) 167
HapII CCGG 3 cut(s) 258, 375, 429
Hin1II CATG 7 cut(s) 359, 389, 401, 413, 425, 443, 455
HpaII CCGG 3 cut(s) 258, 375, 429
HphI GGTGA 5 cut(s) 162, 247, 364, 406, 418
Hpy188III TCNNGA 2 cut(s) 241, 308
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 3 cut(s) 406, 418, 448
HpyCH4IV ACGT 2 cut(s) 18, 187
HpyCH4V TGCA 3 cut(s) 365, 409, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 233
HpySE526I ACGT 2 cut(s) 18, 187
Hsp92II CATG 7 cut(s) 359, 389, 401, 413, 425, 443, 455
KpnI GGTACC 1 cut(s) 212
Ksp22I TGATCA 2 cut(s) 382, 436
Kzo9I GATC 2 cut(s) 382, 436
LpnPI CCDG 4 cut(s) 271, 284, 388, 442
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 2 cut(s) 121, 169
MaeI CTAG 2 cut(s) 294, 368
MaeII ACGT 2 cut(s) 18, 187
MalI GATC 2 cut(s) 384, 438
MboI GATC 2 cut(s) 382, 436
MboII GAAGA 2 cut(s) 109, 128
MluCI AATT 2 cut(s) 157, 313
MnlI CCTC 1 cut(s) 178
MseI TTAA 2 cut(s) 29, 216
MspI CCGG 3 cut(s) 258, 375, 429
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 2 cut(s) 382, 436
NlaIII CATG 7 cut(s) 359, 389, 401, 413, 425, 443, 455
NlaIV GGNNCC 1 cut(s) 210
NmuCI GTSAC 7 cut(s) 253, 289, 346, 370, 412, 424, 454
NspI RCATGY 2 cut(s) 413, 455
PaeR7I CTCGAG 1 cut(s) 306
PceI AGGCCT 1 cut(s) 167
PflFI GACNNNGTC 1 cut(s) 287
PkrI GCNGC 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 210
PsrI GAACNNNNNNTAC 2 cut(s) 192, 224
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 2 cut(s) 29, 216
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 2 cut(s) 382, 436
SetI ASST 5 cut(s) 21, 190, 198, 214, 273
SfaNI GCATC 2 cut(s) 121, 169
Sfr274I CTCGAG 1 cut(s) 306
SlaI CTCGAG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 306
SmoI CTYRAG 1 cut(s) 306
SpeI ACTAGT 2 cut(s) 293, 367
Sse9I AATT 2 cut(s) 157, 313
SseBI AGGCCT 1 cut(s) 167
SsiI CCGC 1 cut(s) 173
SspMI CTAG 2 cut(s) 294, 368
StuI AGGCCT 1 cut(s) 167
TaaI ACNGT 3 cut(s) 406, 418, 448
TaiI ACGT 2 cut(s) 21, 190
TaqI TCGA 3 cut(s) 198, 240, 307
TaqII GACCGA 1 cut(s) 383
TasI AATT 2 cut(s) 157, 313
Tru1I TTAA 2 cut(s) 29, 216
Tru9I TTAA 2 cut(s) 29, 216
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 7 cut(s) 253, 289, 346, 370, 412, 424, 454
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 7 cut(s) 253, 289, 346, 370, 412, 424, 454
TspDTI ATGAA 1 cut(s) 410
TspRI CASTG 1 cut(s) 355
Tth111I GACNNNGTC 1 cut(s) 287
XapI RAATTY 2 cut(s) 157, 313
XceI RCATGY 2 cut(s) 413, 455
XhoI CTCGAG 1 cut(s) 306
XspI CTAG 2 cut(s) 294, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.