Rroxscaffold_5G00339120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000274
Physical Location & Seq
Forward (+)
7445517 .. 7447715
2199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00339120.1

Sequence Viewer

Length: 441 bp
ATGGCGGTGACAGAACTCAAAGACAACCCTCGGCAAGGAGAAGATTCATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAAGAGAGGGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCAGAAAGTAGTCACAGCTGGAACTCAACACATGAAGAATCTTCGAGGAATGGGCCAACTAAAAAAGAAAACAAAGTGAGGAATCCGAAGAAGAACAATCGAAGAACAAAGACCGAAGAAACAATTGGGGAAAAGTTGAAACCGATAAAATGGAAGAAAGTAAAAGAGGGAAAAAAGCAAAAGCAGAAAACCGAAGATGAAGAAGAATCAAGTGAATATGAGGAAGGAACAACCGAAGATGAAGAAGAATCGATGAAGAACAAGTCCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.98

Weight (kDa)

8.79

Isoelectric Point (pI)

54.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 57
AcsI RAATTY 2 cut(s) 87, 139
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 2 cut(s) 139, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 276, 308
AluBI AGCT 3 cut(s) 118, 149, 186
AluI AGCT 3 cut(s) 118, 149, 186
Alw21I GWGCWC 1 cut(s) 151
AoxI GGCC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 87, 139
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 92
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BcnI CCSGG 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 436
Bpu14I TTCGAA 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 436
Bsa29I ATCGAT 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 419
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 419
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 435
BslI CCNNNNNNNGG 1 cut(s) 35
BsnI GGCC 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 72
BspACI CCGC 2 cut(s) 5, 57
BspANI GGCC 1 cut(s) 223
BspDI ATCGAT 1 cut(s) 419
BspLI GGNNCC 1 cut(s) 108
BspT104I TTCGAA 1 cut(s) 92
BsrGI TGTACA 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 29
BstAUI TGTACA 1 cut(s) 72
BstBI TTCGAA 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 133
BstSCI CCNGG 1 cut(s) 434
Bsu15I ATCGAT 1 cut(s) 419
BsuRI GGCC 1 cut(s) 223
BsuTUI ATCGAT 1 cut(s) 419
BtsCI GGATG 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 419
Csp6I GTAC 1 cut(s) 73
CviAII CATG 2 cut(s) 152, 200
CviJI RGCY 4 cut(s) 118, 149, 186, 223
CviKI_1 RGCY 4 cut(s) 118, 149, 186, 223
CviQI GTAC 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoT38I GRGCYC 1 cut(s) 151
FaeI CATG 2 cut(s) 155, 203
FaiI YATR 3 cut(s) 153, 201, 387
FatI CATG 2 cut(s) 151, 199
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 151
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 435
Hin1II CATG 2 cut(s) 155, 203
HinfI GANTC 5 cut(s) 44, 206, 250, 374, 416
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 255
Hpy8I GTNNAC 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 386
HpyCH4V TGCA 1 cut(s) 170
Hsp92II CATG 2 cut(s) 155, 203
LpnPI CCDG 1 cut(s) 172
MaeIII GTNAC 2 cut(s) 7, 179
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 3 cut(s) 87, 139, 291
MnlI CCTC 6 cut(s) 39, 96, 207, 240, 328, 382
MspA1I CMGCKG 1 cut(s) 186
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 1 cut(s) 436
MunI CAATTG 1 cut(s) 291
NciI CCSGG 1 cut(s) 436
NlaIII CATG 2 cut(s) 155, 203
NlaIV GGNNCC 1 cut(s) 108
NmeAIII GCCGAG 1 cut(s) 10
NmuCI GTSAC 2 cut(s) 7, 179
NspV TTCGAA 1 cut(s) 92
PfeI GAWTC 5 cut(s) 44, 206, 250, 374, 416
Psp124BI GAGCTC 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 108
PspPI GGNCC 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 186
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 151
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 436
SduI GDGCHC 1 cut(s) 151
SetI ASST 3 cut(s) 120, 151, 188
SfuI TTCGAA 1 cut(s) 92
SgeI CNNG 7 cut(s) 42, 47, 164, 199, 212, 225, 390
Sse9I AATT 3 cut(s) 87, 139, 291
SsiI CCGC 2 cut(s) 5, 57
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 434
TaqI TCGA 4 cut(s) 92, 212, 268, 419
TaqII GACCGA 1 cut(s) 296
TasI AATT 3 cut(s) 87, 139, 291
TatI WGTACW 1 cut(s) 72
TfiI GAWTC 5 cut(s) 44, 206, 250, 374, 416
TseFI GTSAC 2 cut(s) 7, 179
Tsp45I GTSAC 2 cut(s) 7, 179
TspDTI ATGAA 5 cut(s) 36, 216, 381, 423, 437
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 2 cut(s) 87, 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.