Rroxscaffold_1G00064040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000274
Physical Location & Seq
Forward (+)
85895466 .. 85899155
3690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00064040.1

Sequence Viewer

Length: 792 bp
ATGAAAAGAACAGTTCGAAGAGGAACTGAAAATGATGGAAGTTCAATTGACCGAAACGAGAGAGAAAGCATAAACTGGATCAAGGATAACTATAAACGAAAAATGGCAGTGACAGAACTCAAAGACAACCCTCGGCAAGGAGAAGATTCATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTCGAAAAAAGAGAGAGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTCAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTCAACACATGAAGAATCAAGAATCGATGAAGAACAAGTCCGGGGTAAGAAGACGAAGAAGGATAAAAAGAACAAAACTGGAAACCGAGAAAAGAAAAAACTGGAAGGAACCGAAGATGAAGAAGAATCAAATGAAGAACAAGTCAGCGGTAAGAAGAAGAATAAGGATAAAAAGGAGAAAACTAAAAAGGAGAAAAGAAGAAACAGGGAAGAAACTGAAGATGAAGAAGAAGTTCGTGCTAAGAAGAAGAAGAAAATGGATAAAAGGAAGACAAAAAAAGAGAGTACAAAGAAGAAGGAAGAAACGACGAGGAAGAAGATACAAAGGATGATGAAGAGGAAAAAGTCCCAGCGAAGAGAAAAAGATATATCGGTTTTGCCACAAGACGGGAGTAGTGCCGCCAATCTCTGGAAGAGAAACAGAAAAACACGGAATAAGAAAGTGGCAATTAAAGACCCCGATAGAAAAAAGGGGATTTCAACACCATGGGGAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

31.28

Weight (kDa)

10.07

Isoelectric Point (pI)

53.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 702
AciI CCGC 3 cut(s) 159, 441, 693
AclWI GGATC 1 cut(s) 86
AcsI RAATTY 2 cut(s) 189, 241
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 2 cut(s) 176, 580
AfiI CCNNNNNNNGG 3 cut(s) 137, 680, 702
AgsI TTSAA 3 cut(s) 45, 241, 774
AluBI AGCT 3 cut(s) 220, 251, 288
AluI AGCT 3 cut(s) 220, 251, 288
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 189, 241
Asp700I GAANNNNTTC 1 cut(s) 525
AsuC2I CCSGG 1 cut(s) 335
AsuII TTCGAA 2 cut(s) 16, 194
BanII GRGCYC 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 350, 569
Bbv12I GWGCWC 1 cut(s) 253
BccI CCATC 1 cut(s) 29
BcnI CCSGG 1 cut(s) 335
BisI GCNGC 1 cut(s) 693
BlsI GCNGC 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 335
BpiI GAAGAC 2 cut(s) 350, 569
Bpu14I TTCGAA 2 cut(s) 16, 194
BpuMI CCSGG 1 cut(s) 335
Bsa29I ATCGAT 1 cut(s) 318
BsaJI CCNNGG 3 cut(s) 131, 334, 779
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 680, 702
Bse1I ACTGG 3 cut(s) 80, 376, 399
BseCI ATCGAT 1 cut(s) 318
BseDI CCNNGG 3 cut(s) 131, 334, 779
BseGI GGATG 2 cut(s) 235, 627
BseLI CCNNNNNNNGG 3 cut(s) 137, 680, 702
BseNI ACTGG 3 cut(s) 80, 376, 399
BseYI CCCAGC 1 cut(s) 642
BshVI ATCGAT 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 334
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 3 cut(s) 137, 680, 702
BsmFI GGGAC 1 cut(s) 625
Bsp119I TTCGAA 2 cut(s) 16, 194
Bsp1286I GDGCHC 1 cut(s) 253
Bsp1407I TGTACA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 78
Bsp19I CCATGG 1 cut(s) 779
BspACI CCGC 3 cut(s) 159, 441, 693
BspDI ATCGAT 1 cut(s) 318
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 1 cut(s) 86
BspT104I TTCGAA 2 cut(s) 16, 194
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 3 cut(s) 80, 376, 399
BssECI CCNNGG 3 cut(s) 131, 334, 779
BssMI GATC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 779
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 4 cut(s) 13, 623, 643, 701
BstAUI TGTACA 1 cut(s) 174
BstBI TTCGAA 2 cut(s) 16, 194
BstDEI CTNAG 1 cut(s) 534
BstDSI CCRYGG 1 cut(s) 779
BstENI CCTNNNNNAGG 1 cut(s) 135
BstF5I GGATG 2 cut(s) 235, 627
BstKTI GATC 1 cut(s) 81
BstMBI GATC 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 333
BstV2I GAAGAC 2 cut(s) 350, 569
Bsu15I ATCGAT 1 cut(s) 318
BsuTUI ATCGAT 1 cut(s) 318
BtgI CCRYGG 1 cut(s) 779
BtsCI GGATG 2 cut(s) 235, 627
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 318
Csp6I GTAC 2 cut(s) 175, 579
CviAII CATG 3 cut(s) 254, 302, 780
CviJI RGCY 3 cut(s) 220, 251, 288
CviKI_1 RGCY 3 cut(s) 220, 251, 288
CviQI GTAC 2 cut(s) 175, 579
DdeI CTNAG 1 cut(s) 534
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eam1104I CTCTTC 4 cut(s) 13, 623, 643, 701
EarI CTCTTC 4 cut(s) 13, 623, 643, 701
Ecl136II GAGCTC 1 cut(s) 251
Eco130I CCWWGG 1 cut(s) 779
Eco24I GRGCYC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 779
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 779
FaeI CATG 3 cut(s) 257, 305, 783
FaiI YATR 6 cut(s) 71, 93, 255, 303, 662, 781
FaqI GGGAC 1 cut(s) 625
FatI CATG 3 cut(s) 253, 301, 779
Fnu4HI GCNGC 1 cut(s) 693
FokI GGATG 2 cut(s) 242, 634
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 693
GluI GCNGC 1 cut(s) 693
GsaI CCCAGC 1 cut(s) 646
HapII CCGG 1 cut(s) 334
Hin1II CATG 3 cut(s) 257, 305, 783
HinfI GANTC 4 cut(s) 146, 308, 315, 419
HpaII CCGG 1 cut(s) 334
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 312, 703
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 3 cut(s) 346, 392, 583
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 272
HpyF3I CTNAG 1 cut(s) 534
Hsp92II CATG 3 cut(s) 257, 305, 783
Kzo9I GATC 1 cut(s) 78
LpnPI CCDG 8 cut(s) 61, 274, 347, 357, 380, 484, 656, 688
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 4 cut(s) 45, 189, 241, 741
MnlI CCTC 4 cut(s) 14, 141, 597, 624
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 1 cut(s) 744
MspA1I CMGCKG 2 cut(s) 288, 441
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 1 cut(s) 45
NciI CCSGG 1 cut(s) 335
NcoI CCATGG 1 cut(s) 779
NdeII GATC 1 cut(s) 78
NlaIII CATG 3 cut(s) 257, 305, 783
NlaIV GGNNCC 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 109
NspV TTCGAA 2 cut(s) 16, 194
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 4 cut(s) 146, 308, 315, 419
PflMI CCANNNNNTGG 1 cut(s) 702
PkrI GCNGC 1 cut(s) 694
Psp124BI GAGCTC 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 642
PspN4I GGNNCC 1 cut(s) 403
PvuII CAGCTG 1 cut(s) 288
RsaI GTAC 2 cut(s) 176, 580
RsaNI GTAC 2 cut(s) 175, 579
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 1 cut(s) 693
Sau3AI GATC 1 cut(s) 78
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 253
SetI ASST 3 cut(s) 222, 253, 290
SfuI TTCGAA 2 cut(s) 16, 194
Sse9I AATT 4 cut(s) 45, 189, 241, 741
SsiI CCGC 3 cut(s) 159, 441, 693
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 779
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 3 cut(s) 16, 194, 318
TaqII GACCGA 1 cut(s) 66
TasI AATT 4 cut(s) 45, 189, 241, 741
TatI WGTACW 2 cut(s) 174, 578
TauI GCSGC 1 cut(s) 695
TfiI GAWTC 4 cut(s) 146, 308, 315, 419
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 8 cut(s) 17, 138, 318, 336, 426, 441, 531, 641
TspGWI ACGGA 1 cut(s) 739
TspRI CASTG 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 702
XagI CCTNNNNNAGG 1 cut(s) 135
XapI RAATTY 2 cut(s) 189, 241
XmnI GAANNNNTTC 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.