Rorug02G0570100

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000274
Physical Location & Seq
Reverse (-)
69570475 .. 69571935
1461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0570100.1

Sequence Viewer

Length: 432 bp
ATGGGCCGCGGAGTCAGCTGTGGTGGTGGACAAAGTTCATTGGGATACTTGTTTGGAGGTGGAGCAGAGGCTGTTCCAAACAACACTCGTTCTCTGAATAGGACTTGTTCTGCTAGCTCGATACCAATTGAAATGCAACCTCCAGCAGGCATTCCCACAAAAAGGGATGCAGTTGATAAGCAAGTCCCAGCTGCAAGCAATAATCCCACAAACACAATACCGTCTCCGAATAAGACTAGTGCTCCTGCTACAAATCCAATTGACAAGAATATTCCAGCAGGCATTCAGAGCAATCCCACAAATAATTACTTGCGTTTGGATGGCCAAAACTGTGGCAACTTCATCACGGATCGACCATCTAGGAAGGTTCATTCAGCTCCGGGAGGTGGATCGTCCCTCGGATACTTGTTTGGCGGTAGTGATGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

143

Amino Acids

14.58

Weight (kDa)

9.41

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 9
AciI CCGC 3 cut(s) 7, 9, 414
AclWI GGATC 2 cut(s) 357, 397
AcoI YGGCCR 1 cut(s) 322
AfiI CCNNNNNNNGG 3 cut(s) 146, 162, 386
AgsI TTSAA 1 cut(s) 131
AhlI ACTAGT 1 cut(s) 236
AluBI AGCT 4 cut(s) 18, 117, 191, 377
AluI AGCT 4 cut(s) 18, 117, 191, 377
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 357, 397
AlwNI CAGNNNCTG 1 cut(s) 71
AoxI GGCC 2 cut(s) 4, 322
ApeKI GCWGC 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 381
AsuNHI GCTAGC 1 cut(s) 113
BalI TGGCCA 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 314, 364, 416
BciVI GTATCC 2 cut(s) 38, 395
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 228
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 3 cut(s) 114, 237, 360
BfuI GTATCC 2 cut(s) 38, 395
BisI GCNGC 2 cut(s) 7, 192
BlsI GCNGC 2 cut(s) 8, 193
Bme1390I CCNGG 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 381
BmsI GCATC 1 cut(s) 157
BmtI GCTAGC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 7, 397
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 162, 386
BseDI CCNNGG 2 cut(s) 7, 397
BseGI GGATG 2 cut(s) 172, 325
BseLI CCNNNNNNNGG 3 cut(s) 146, 162, 386
BseXI GCAGC 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 187
Bsh1236I CGCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 6, 324
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 2 cut(s) 170, 379
BslI CCNNNNNNNGG 3 cut(s) 146, 162, 386
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 2 cut(s) 170, 379
BsmI GAATGC 2 cut(s) 150, 282
BsnI GGCC 2 cut(s) 6, 324
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 349, 389
BspACI CCGC 3 cut(s) 7, 9, 414
BspANI GGCC 2 cut(s) 6, 324
BspFNI CGCG 1 cut(s) 9
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 2 cut(s) 357, 397
BssECI CCNNGG 2 cut(s) 7, 397
BssMI GATC 2 cut(s) 349, 389
Bst4CI ACNGT 2 cut(s) 222, 332
BstC8I GCNNGC 4 cut(s) 115, 148, 196, 280
BstDSI CCRYGG 1 cut(s) 7
BstENI CCTNNNNNAGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 172, 325
BstFNI CGCG 1 cut(s) 9
BstKTI GATC 2 cut(s) 352, 392
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 349, 389
BstMWI GCNNNNNNNGC 2 cut(s) 15, 288
BstSCI CCNGG 1 cut(s) 379
BstUI CGCG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 332
BsuI GTATCC 2 cut(s) 38, 395
BsuRI GGCC 2 cut(s) 6, 324
BtgI CCRYGG 1 cut(s) 7
BtsCI GGATG 2 cut(s) 172, 325
Cac8I GCNNGC 4 cut(s) 115, 148, 196, 280
CaiI CAGNNNCTG 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 10
CviJI RGCY 7 cut(s) 6, 18, 71, 117, 191, 324, 377
CviKI_1 RGCY 7 cut(s) 6, 18, 71, 117, 191, 324, 377
DpnI GATC 2 cut(s) 351, 391
DpnII GATC 2 cut(s) 349, 389
EaeI YGGCCR 1 cut(s) 322
EcoNI CCTNNNNNAGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 228
FaqI GGGAC 2 cut(s) 170, 379
Fnu4HI GCNGC 2 cut(s) 7, 192
FokI GGATG 2 cut(s) 179, 332
Fsp4HI GCNGC 2 cut(s) 7, 192
FspBI CTAG 3 cut(s) 114, 237, 360
GluI GCNGC 2 cut(s) 7, 192
GsaI CCCAGC 1 cut(s) 191
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 2 cut(s) 6, 324
HapII CCGG 1 cut(s) 380
HinfI GANTC 1 cut(s) 12
HpaII CCGG 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 4 cut(s) 96, 228, 288, 401
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 2 cut(s) 222, 332
HpyCH4V TGCA 3 cut(s) 136, 170, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 15, 288
KspI CCGCGG 1 cut(s) 10
Kzo9I GATC 2 cut(s) 349, 389
LmnI GCTCC 3 cut(s) 62, 247, 382
LpnPI CCDG 7 cut(s) 132, 156, 201, 258, 264, 288, 393
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 1 cut(s) 157
MaeI CTAG 3 cut(s) 114, 237, 360
MalI GATC 2 cut(s) 351, 391
MboI GATC 2 cut(s) 349, 389
MfeI CAATTG 2 cut(s) 126, 258
MhlI GDGCHC 1 cut(s) 244
MlsI TGGCCA 1 cut(s) 324
MluCI AATT 3 cut(s) 126, 258, 304
MluNI TGGCCA 1 cut(s) 324
MlyI GAGTC 1 cut(s) 21
MnlI CCTC 5 cut(s) 50, 61, 150, 377, 407
Mox20I TGGCCA 1 cut(s) 324
MscI TGGCCA 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 324
MspA1I CMGCKG 3 cut(s) 9, 18, 191
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 2 cut(s) 126, 258
Mva1269I GAATGC 2 cut(s) 150, 282
MvnI CGCG 1 cut(s) 9
MwoI GCNNNNNNNGC 2 cut(s) 15, 288
NciI CCSGG 1 cut(s) 381
NdeII GATC 2 cut(s) 349, 389
NheI GCTAGC 1 cut(s) 113
PctI GAATGC 2 cut(s) 150, 282
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 2 cut(s) 8, 193
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 71
PvuII CAGCTG 2 cut(s) 18, 191
SacII CCGCGG 1 cut(s) 10
SatI GCNGC 2 cut(s) 7, 192
Sau3AI GATC 2 cut(s) 349, 389
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 244
SetI ASST 8 cut(s) 20, 61, 119, 142, 193, 369, 379, 388
SfaNI GCATC 1 cut(s) 157
Sfr303I CCGCGG 1 cut(s) 10
SgrBI CCGCGG 1 cut(s) 10
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 3 cut(s) 126, 258, 304
SsiI CCGC 3 cut(s) 7, 9, 414
SspI AATATT 1 cut(s) 271
SspMI CTAG 3 cut(s) 114, 237, 360
StyD4I CCNGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 222, 332
TaqI TCGA 2 cut(s) 119, 352
TasI AATT 3 cut(s) 126, 258, 304
TauI GCSGC 1 cut(s) 9
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 3 cut(s) 27, 331, 359
TspGWI ACGGA 1 cut(s) 362
XagI CCTNNNNNAGG 1 cut(s) 144
XspI CTAG 3 cut(s) 114, 237, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.