Rh7BG277000

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000274
Physical Location & Seq
Forward (+)
25734300 .. 25737531
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG277000.1

Sequence Viewer

Length: 408 bp
ATGATCAGAAAAAGCGAAAGAAGAGAGAGAGGAGAGGAGAGGATCTCGGTGACAATAGACCGGTTGCAAGGAAAGGAGAAGATCTCGGTGACAATAGACCGGTTGGAAGTTCTAACTATTGTTGGCTGGAATATCTACAGAAGAAGAAGAATAGAGATTCAAATCGGTTCCATCAATAATCGAATTGTCTGCTTCGTCCTTCTCCGACTCGCCGTTGATCTCTCCTTCGAGCGGATCCTCAACTCCGGCGACTCCGACGCTGATCAGATCAAGCTCATTGATCACGCCCTGCAGTTGGGATCGGTGCTCCTCGAGGCTCCGGTAAGAGCTCGGCGAGACGACGAGCCTCCAAGCACAACTCCATCGCCTGGGCTCTCCCTCTCAACCTCACCATCAAGGTTACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

135

Amino Acids

15.33

Weight (kDa)

9.49

Isoelectric Point (pI)

60.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 368
AccBSI CCGCTC 1 cut(s) 232
AciI CCGC 1 cut(s) 232
AclWI GGATC 4 cut(s) 50, 229, 242, 307
AfiI CCNNNNNNNGG 3 cut(s) 231, 295, 368
AgeI ACCGGT 2 cut(s) 60, 99
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 2 cut(s) 274, 329
AluI AGCT 2 cut(s) 274, 329
Alw21I GWGCWC 2 cut(s) 309, 331
Alw26I GTCTC 1 cut(s) 330
AlwI GGATC 4 cut(s) 50, 229, 242, 307
Ama87I CYCGRG 1 cut(s) 311
AsiGI ACCGGT 2 cut(s) 60, 99
AsuHPI GGTGA 3 cut(s) 61, 100, 381
AvaI CYCGRG 1 cut(s) 311
BamHI GGATCC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 331, 375
Bbv12I GWGCWC 2 cut(s) 309, 331
BccI CCATC 3 cut(s) 179, 370, 400
BceAI ACGGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 1 cut(s) 369
BclI TGATCA 3 cut(s) 3, 262, 280
BcoDI GTCTC 1 cut(s) 330
BfmI CTRYAG 3 cut(s) 136, 290, 404
BglII AGATCT 1 cut(s) 81
Bme1390I CCNGG 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 311
BmiI GGNNCC 3 cut(s) 169, 236, 318
BmrFI CCNGG 1 cut(s) 369
BplI GAGNNNNNCTC 4 cut(s) 29, 61, 68, 100
BsaBI GATNNNNATC 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 368
BsaWI WCCGGW 3 cut(s) 60, 99, 319
Bsc4I CCNNNNNNNGG 3 cut(s) 231, 295, 368
Bse118I RCCGGY 2 cut(s) 60, 99
Bse8I GATNNNNATC 1 cut(s) 161
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 368
BseJI GATNNNNATC 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 231, 295, 368
BseRI GAGGAG 3 cut(s) 45, 50, 299
BshTI ACCGGT 2 cut(s) 60, 99
BsiHKAI GWGCWC 2 cut(s) 309, 331
BsiHKCI CYCGRG 1 cut(s) 311
BsiSI CCGG 4 cut(s) 61, 100, 246, 320
BslI CCNNNNNNNGG 3 cut(s) 231, 295, 368
BsmAI GTCTC 1 cut(s) 330
BsmBI CGTCTC 1 cut(s) 330
BsoBI CYCGRG 1 cut(s) 311
Bsp1286I GDGCHC 3 cut(s) 309, 331, 375
Bsp143I GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
BspACI CCGC 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 169, 236, 318
BspMAI CTGCAG 1 cut(s) 294
BspPI GGATC 4 cut(s) 50, 229, 242, 307
BsrBI CCGCTC 1 cut(s) 232
BsrFI RCCGGY 2 cut(s) 60, 99
BssAI RCCGGY 2 cut(s) 60, 99
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
Bst2UI CCWGG 1 cut(s) 369
Bst6I CTCTTC 1 cut(s) 16
BstKTI GATC 9 cut(s) 6, 45, 84, 220, 237, 265, 270, 283, 302
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
BstNI CCWGG 1 cut(s) 369
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 3 cut(s) 136, 290, 404
BstX2I RGATCY 3 cut(s) 42, 81, 234
BstYI RGATCY 3 cut(s) 42, 81, 234
BtgZI GCGATG 1 cut(s) 348
Cfr10I RCCGGY 2 cut(s) 60, 99
CseI GACGC 1 cut(s) 266
CspAI ACCGGT 2 cut(s) 60, 99
CviJI RGCY 6 cut(s) 126, 274, 317, 329, 346, 373
CviKI_1 RGCY 6 cut(s) 126, 274, 317, 329, 346, 373
DpnI GATC 9 cut(s) 5, 44, 83, 219, 236, 264, 269, 282, 301
DpnII GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
Eam1104I CTCTTC 1 cut(s) 16
EarI CTCTTC 1 cut(s) 16
Ecl136II GAGCTC 1 cut(s) 329
Eco24I GRGCYC 2 cut(s) 331, 375
Eco53kI GAGCTC 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 367
EcoT38I GRGCYC 2 cut(s) 331, 375
Esp3I CGTCTC 1 cut(s) 330
FaiI YATR 1 cut(s) 406
FbaI TGATCA 3 cut(s) 3, 262, 280
FriOI GRGCYC 2 cut(s) 331, 375
HapII CCGG 4 cut(s) 61, 100, 246, 320
HgaI GACGC 1 cut(s) 266
HinfI GANTC 3 cut(s) 157, 207, 251
HpaII CCGG 4 cut(s) 61, 100, 246, 320
HphI GGTGA 3 cut(s) 61, 100, 381
Hpy188I TCNGA 4 cut(s) 8, 206, 256, 267
Hpy99I CGWCG 2 cut(s) 260, 344
HpyAV CCTTC 2 cut(s) 209, 235
HpyCH4V TGCA 2 cut(s) 67, 292
Ksp22I TGATCA 3 cut(s) 3, 262, 280
Kzo9I GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
LmnI GCTCC 2 cut(s) 312, 322
LpnPI CCDG 8 cut(s) 74, 112, 113, 259, 302, 333, 354, 381
MaeIII GTNAC 3 cut(s) 49, 88, 399
MalI GATC 9 cut(s) 5, 44, 83, 219, 236, 264, 269, 282, 301
MbiI CCGCTC 1 cut(s) 232
MboI GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
MboII GAAGA 5 cut(s) 33, 91, 153, 156, 159
MflI RGATCY 3 cut(s) 42, 81, 234
MhlI GDGCHC 3 cut(s) 309, 331, 375
MluCI AATT 1 cut(s) 183
MlyI GAGTC 2 cut(s) 201, 245
MmeI TCCRAC 3 cut(s) 84, 229, 279
MnlI CCTC 9 cut(s) 23, 28, 33, 248, 307, 320, 357, 389, 397
MspI CCGG 4 cut(s) 61, 100, 246, 320
MspR9I CCNGG 1 cut(s) 369
MvaI CCWGG 1 cut(s) 369
NdeII GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
NlaIV GGNNCC 3 cut(s) 169, 236, 318
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 2 cut(s) 49, 88
PaeR7I CTCGAG 1 cut(s) 311
PfeI GAWTC 1 cut(s) 157
PflMI CCANNNNNTGG 1 cut(s) 368
PinAI ACCGGT 2 cut(s) 60, 99
PleI GAGTC 2 cut(s) 201, 245
PpsI GAGTC 2 cut(s) 201, 245
Psp124BI GAGCTC 1 cut(s) 331
Psp6I CCWGG 1 cut(s) 367
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 169, 236, 318
PspXI VCTCGAGB 1 cut(s) 311
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 3 cut(s) 42, 81, 234
SacI GAGCTC 1 cut(s) 331
Sau3AI GATC 9 cut(s) 3, 42, 81, 217, 234, 262, 267, 280, 299
SchI GAGTC 2 cut(s) 201, 245
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 3 cut(s) 309, 331, 375
SetI ASST 4 cut(s) 276, 331, 389, 401
SfcI CTRYAG 3 cut(s) 136, 290, 404
Sfr274I CTCGAG 1 cut(s) 311
SlaI CTCGAG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 232
SstI GAGCTC 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 367
TaqI TCGA 3 cut(s) 181, 228, 312
TasI AATT 1 cut(s) 183
TfiI GAWTC 1 cut(s) 157
TseFI GTSAC 2 cut(s) 49, 88
Tsp45I GTSAC 2 cut(s) 49, 88
Van91I CCANNNNNTGG 1 cut(s) 368
XhoI CTCGAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.