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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 949 |
| AccII | CGCG | 1 cut(s) | 358 |
| AccIII | TCCGGA | 1 cut(s) | 797 |
| AciI | CCGC | 2 cut(s) | 356, 1000 |
| AclWI | GGATC | 6 cut(s) | 51, 489, 630, 655, 1172, 1555 |
| AcuI | CTGAAG | 1 cut(s) | 1067 |
| AfaI | GTAC | 3 cut(s) | 1220, 1396, 1555 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 819, 1198, 1242 |
| AflII | CTTAAG | 1 cut(s) | 907 |
| AjnI | CCWGG | 2 cut(s) | 117, 1160 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1615, 1647 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 499, 531 |
| AluBI | AGCT | 4 cut(s) | 1148, 1419, 1569, 1693 |
| AluI | AGCT | 4 cut(s) | 1148, 1419, 1569, 1693 |
| Alw21I | GWGCWC | 1 cut(s) | 1695 |
| Alw26I | GTCTC | 2 cut(s) | 723, 1505 |
| AlwI | GGATC | 6 cut(s) | 51, 489, 630, 655, 1172, 1555 |
| Aor13HI | TCCGGA | 1 cut(s) | 797 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 200, 372, 1474 |
| AspS9I | GGNCC | 4 cut(s) | 353, 584, 1002, 1610 |
| AsuHPI | GGTGA | 3 cut(s) | 50, 196, 938 |
| AsuII | TTCGAA | 1 cut(s) | 376 |
| AvaII | GGWCC | 4 cut(s) | 353, 584, 1002, 1610 |
| BanI | GGYRCC | 1 cut(s) | 949 |
| BanII | GRGCYC | 2 cut(s) | 71, 1695 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1459, 1491 |
| BbsI | GAAGAC | 2 cut(s) | 145, 1592 |
| Bbv12I | GWGCWC | 1 cut(s) | 1695 |
| BccI | CCATC | 3 cut(s) | 246, 294, 726 |
| BciT130I | CCWGG | 2 cut(s) | 119, 1162 |
| BclI | TGATCA | 2 cut(s) | 555, 1636 |
| BcoDI | GTCTC | 2 cut(s) | 723, 1505 |
| BfaI | CTAG | 5 cut(s) | 173, 722, 1277, 1283, 1332 |
| BfrI | CTTAAG | 1 cut(s) | 907 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 1162 |
| Bme18I | GGWCC | 4 cut(s) | 353, 584, 1002, 1610 |
| BmgT120I | GGNCC | 4 cut(s) | 353, 584, 1002, 1610 |
| BmiI | GGNNCC | 3 cut(s) | 125, 306, 951 |
| BmrFI | CCNGG | 2 cut(s) | 119, 1162 |
| BmrI | ACTGGG | 1 cut(s) | 1329 |
| BmsI | GCATC | 3 cut(s) | 20, 347, 1241 |
| BmuI | ACTGGG | 1 cut(s) | 1329 |
| BoxI | GACNNNNGTC | 1 cut(s) | 163 |
| BpiI | GAAGAC | 2 cut(s) | 145, 1592 |
| BpmI | CTGGAG | 1 cut(s) | 101 |
| Bpu14I | TTCGAA | 1 cut(s) | 376 |
| BpuEI | CTTGAG | 2 cut(s) | 83, 694 |
| BsaI | GGTCTC | 1 cut(s) | 723 |
| BsaJI | CCNNGG | 5 cut(s) | 118, 888, 1160, 1403, 1622 |
| BsaWI | WCCGGW | 3 cut(s) | 134, 206, 797 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 819, 1198, 1242 |
| Bse1I | ACTGG | 2 cut(s) | 301, 1324 |
| Bse3DI | GCAATG | 1 cut(s) | 793 |
| BseAI | TCCGGA | 1 cut(s) | 797 |
| BseBI | CCWGG | 2 cut(s) | 119, 1162 |
| BseDI | CCNNGG | 5 cut(s) | 118, 888, 1160, 1403, 1622 |
| BseGI | GGATG | 4 cut(s) | 305, 884, 1232, 1693 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 819, 1198, 1242 |
| BseMI | GCAATG | 1 cut(s) | 793 |
| BseMII | CTCAG | 5 cut(s) | 63, 84, 1101, 1516, 1571 |
| BseNI | ACTGG | 2 cut(s) | 301, 1324 |
| BseRI | GAGGAG | 1 cut(s) | 1605 |
| Bsh1236I | CGCG | 1 cut(s) | 358 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1660 |
| BshNI | GGYRCC | 1 cut(s) | 949 |
| BsiEI | CGRYCG | 1 cut(s) | 1660 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1695 |
| BsiSI | CCGG | 3 cut(s) | 135, 207, 798 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 819, 1198, 1242 |
| BsmAI | GTCTC | 2 cut(s) | 723, 1505 |
| BsmBI | CGTCTC | 1 cut(s) | 1505 |
| Bso31I | GGTCTC | 1 cut(s) | 723 |
| Bsp119I | TTCGAA | 1 cut(s) | 376 |
| Bsp1286I | GDGCHC | 2 cut(s) | 71, 1695 |
| Bsp13I | TCCGGA | 1 cut(s) | 797 |
| BspACI | CCGC | 2 cut(s) | 356, 1000 |
| BspCNI | CTCAG | 5 cut(s) | 62, 83, 1100, 1515, 1570 |
| BspEI | TCCGGA | 1 cut(s) | 797 |
| BspFNI | CGCG | 1 cut(s) | 358 |
| BspLI | GGNNCC | 3 cut(s) | 125, 306, 951 |
| BspPI | GGATC | 6 cut(s) | 51, 489, 630, 655, 1172, 1555 |
| BspT104I | TTCGAA | 1 cut(s) | 376 |
| BspT107I | GGYRCC | 1 cut(s) | 949 |
| BspTI | CTTAAG | 1 cut(s) | 907 |
| BspTNI | GGTCTC | 1 cut(s) | 723 |
| BsrDI | GCAATG | 1 cut(s) | 793 |
| BsrI | ACTGG | 2 cut(s) | 301, 1324 |
| BssECI | CCNNGG | 5 cut(s) | 118, 888, 1160, 1403, 1622 |
| BssT1I | CCWWGG | 2 cut(s) | 888, 1622 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 1162 |
| Bst4CI | ACNGT | 2 cut(s) | 128, 686 |
| Bst6I | CTCTTC | 4 cut(s) | 1283, 1623, 1770, 1775 |
| BstAFI | CTTAAG | 1 cut(s) | 907 |
| BstBI | TTCGAA | 1 cut(s) | 376 |
| BstC8I | GCNNGC | 3 cut(s) | 670, 1025, 1421 |
| BstDEI | CTNAG | 5 cut(s) | 49, 70, 1087, 1502, 1557 |
| BstDSI | CCRYGG | 1 cut(s) | 1403 |
| BstF5I | GGATG | 4 cut(s) | 305, 884, 1232, 1693 |
| BstFNI | CGCG | 1 cut(s) | 358 |
| BstMAI | GTCTC | 2 cut(s) | 723, 1505 |
| BstMCI | CGRYCG | 1 cut(s) | 1660 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1154, 1229, 1699 |
| BstNI | CCWGG | 2 cut(s) | 119, 1162 |
| BstNSI | RCATGY | 1 cut(s) | 1027 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 163 |
| BstSCI | CCNGG | 2 cut(s) | 117, 1160 |
| BstUI | CGCG | 1 cut(s) | 358 |
| BstV2I | GAAGAC | 2 cut(s) | 145, 1592 |
| BstX2I | RGATCY | 4 cut(s) | 43, 481, 622, 1560 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 725, 744, 1463 |
| BstYI | RGATCY | 4 cut(s) | 43, 481, 622, 1560 |
| BtgI | CCRYGG | 1 cut(s) | 1403 |
| BtsCI | GGATG | 4 cut(s) | 305, 884, 1232, 1693 |
| BtsIMutI | CAGTG | 1 cut(s) | 1510 |
| Cac8I | GCNNGC | 3 cut(s) | 670, 1025, 1421 |
| Cfr13I | GGNCC | 4 cut(s) | 353, 584, 1002, 1610 |
| Csp6I | GTAC | 3 cut(s) | 1219, 1395, 1554 |
| CviAII | CATG | 3 cut(s) | 1024, 1305, 1640 |
| CviQI | GTAC | 3 cut(s) | 1219, 1395, 1554 |
| DdeI | CTNAG | 5 cut(s) | 49, 70, 1087, 1502, 1557 |
| DraI | TTTAAA | 1 cut(s) | 1368 |
| Eam1104I | CTCTTC | 4 cut(s) | 1283, 1623, 1770, 1775 |
| EarI | CTCTTC | 4 cut(s) | 1283, 1623, 1770, 1775 |
| Ecl136II | GAGCTC | 1 cut(s) | 1693 |
| Eco130I | CCWWGG | 2 cut(s) | 888, 1622 |
| Eco24I | GRGCYC | 2 cut(s) | 71, 1695 |
| Eco31I | GGTCTC | 1 cut(s) | 723 |
| Eco32I | GATATC | 2 cut(s) | 181, 1494 |
| Eco47I | GGWCC | 4 cut(s) | 353, 584, 1002, 1610 |
| Eco53kI | GAGCTC | 1 cut(s) | 1693 |
| Eco57I | CTGAAG | 1 cut(s) | 1067 |
| EcoICRI | GAGCTC | 1 cut(s) | 1693 |
| EcoRI | GAATTC | 2 cut(s) | 520, 1470 |
| EcoRII | CCWGG | 2 cut(s) | 117, 1160 |
| EcoRV | GATATC | 2 cut(s) | 181, 1494 |
| EcoT14I | CCWWGG | 2 cut(s) | 888, 1622 |
| EcoT38I | GRGCYC | 2 cut(s) | 71, 1695 |
| ErhI | CCWWGG | 2 cut(s) | 888, 1622 |
| Esp3I | CGTCTC | 1 cut(s) | 1505 |
| FaeI | CATG | 3 cut(s) | 1027, 1308, 1643 |
| FatI | CATG | 3 cut(s) | 1023, 1304, 1639 |
| FbaI | TGATCA | 2 cut(s) | 555, 1636 |
| FokI | GGATG | 4 cut(s) | 312, 871, 1219, 1700 |
| FriOI | GRGCYC | 2 cut(s) | 71, 1695 |
| FspBI | CTAG | 5 cut(s) | 173, 722, 1277, 1283, 1332 |
| GsuI | CTGGAG | 1 cut(s) | 101 |
| HapII | CCGG | 3 cut(s) | 135, 207, 798 |
| Hin1II | CATG | 3 cut(s) | 1027, 1308, 1643 |
| HindIII | AAGCTT | 2 cut(s) | 1417, 1567 |
| HinfI | GANTC | 4 cut(s) | 912, 1327, 1433, 1543 |
| HpaII | CCGG | 3 cut(s) | 135, 207, 798 |
| HphI | GGTGA | 3 cut(s) | 50, 196, 938 |
| Hpy166II | GTNNAC | 1 cut(s) | 1610 |
| Hpy188I | TCNGA | 9 cut(s) | 220, 244, 519, 555, 1047, 1491, 1522, 1560, 1636 |
| Hpy8I | GTNNAC | 1 cut(s) | 1610 |
| HpyAV | CCTTC | 9 cut(s) | 527, 575, 603, 743, 891, 1192, 1485, 1673, 1678 |
| HpyCH4III | ACNGT | 2 cut(s) | 128, 686 |
| HpyCH4V | TGCA | 8 cut(s) | 11, 345, 668, 900, 1157, 1308, 1423, 1643 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1154, 1229, 1699 |
| HpyF3I | CTNAG | 5 cut(s) | 49, 70, 1087, 1502, 1557 |
| Hsp92II | CATG | 3 cut(s) | 1027, 1308, 1643 |
| Kpn2I | TCCGGA | 1 cut(s) | 797 |
| Ksp22I | TGATCA | 2 cut(s) | 555, 1636 |
| LweI | GCATC | 3 cut(s) | 20, 347, 1241 |
| MaeI | CTAG | 5 cut(s) | 173, 722, 1277, 1283, 1332 |
| MfeI | CAATTG | 1 cut(s) | 317 |
| MflI | RGATCY | 4 cut(s) | 43, 481, 622, 1560 |
| MhlI | GDGCHC | 2 cut(s) | 71, 1695 |
| MlyI | GAGTC | 2 cut(s) | 921, 1427 |
| MmeI | TCCRAC | 3 cut(s) | 192, 706, 949 |
| MroI | TCCGGA | 1 cut(s) | 797 |
| MroXI | GAANNNNTTC | 3 cut(s) | 200, 372, 1474 |
| MseI | TTAA | 8 cut(s) | 131, 248, 692, 779, 908, 1316, 1367, 1388 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1036, 1461 |
| MspCI | CTTAAG | 1 cut(s) | 907 |
| MspI | CCGG | 3 cut(s) | 135, 207, 798 |
| MspR9I | CCNGG | 2 cut(s) | 119, 1162 |
| MunI | CAATTG | 1 cut(s) | 317 |
| MvaI | CCWGG | 2 cut(s) | 119, 1162 |
| MvnI | CGCG | 1 cut(s) | 358 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1154, 1229, 1699 |
| NlaIII | CATG | 3 cut(s) | 1027, 1308, 1643 |
| NlaIV | GGNNCC | 3 cut(s) | 125, 306, 951 |
| NspI | RCATGY | 1 cut(s) | 1027 |
| NspV | TTCGAA | 1 cut(s) | 376 |
| PaeI | GCATGC | 1 cut(s) | 1027 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1495 |
| PdmI | GAANNNNTTC | 3 cut(s) | 200, 372, 1474 |
| PfeI | GAWTC | 2 cut(s) | 1327, 1543 |
| PleI | GAGTC | 2 cut(s) | 920, 1427 |
| PpsI | GAGTC | 2 cut(s) | 920, 1427 |
| PshAI | GACNNNNGTC | 1 cut(s) | 163 |
| Psp124BI | GAGCTC | 1 cut(s) | 1695 |
| Psp6I | CCWGG | 2 cut(s) | 117, 1160 |
| PspGI | CCWGG | 2 cut(s) | 117, 1160 |
| PspN4I | GGNNCC | 3 cut(s) | 125, 306, 951 |
| PspPI | GGNCC | 4 cut(s) | 353, 584, 1002, 1610 |
| PsuI | RGATCY | 4 cut(s) | 43, 481, 622, 1560 |
| RsaI | GTAC | 3 cut(s) | 1220, 1396, 1555 |
| RsaNI | GTAC | 3 cut(s) | 1219, 1395, 1554 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1036, 1461 |
| SacI | GAGCTC | 1 cut(s) | 1695 |
| SaqAI | TTAA | 8 cut(s) | 131, 248, 692, 779, 908, 1316, 1367, 1388 |
| Sau96I | GGNCC | 4 cut(s) | 353, 584, 1002, 1610 |
| SchI | GAGTC | 2 cut(s) | 921, 1427 |
| ScrFI | CCNGG | 2 cut(s) | 119, 1162 |
| SduI | GDGCHC | 2 cut(s) | 71, 1695 |
| SfaNI | GCATC | 3 cut(s) | 20, 347, 1241 |
| SfuI | TTCGAA | 1 cut(s) | 376 |
| SinI | GGWCC | 4 cut(s) | 353, 584, 1002, 1610 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1036, 1461 |
| SmlI | CTYRAG | 3 cut(s) | 62, 709, 907 |
| SmoI | CTYRAG | 3 cut(s) | 62, 709, 907 |
| SphI | GCATGC | 1 cut(s) | 1027 |
| SsiI | CCGC | 2 cut(s) | 356, 1000 |
| SspMI | CTAG | 5 cut(s) | 173, 722, 1277, 1283, 1332 |
| SstI | GAGCTC | 1 cut(s) | 1695 |
| StyD4I | CCNGG | 2 cut(s) | 117, 1160 |
| StyI | CCWWGG | 2 cut(s) | 888, 1622 |
| TaaI | ACNGT | 2 cut(s) | 128, 686 |
| TaqI | TCGA | 5 cut(s) | 376, 1073, 1259, 1376, 1512 |
| TaqII | GACCGA | 1 cut(s) | 1674 |
| TfiI | GAWTC | 2 cut(s) | 1327, 1543 |
| Tru1I | TTAA | 8 cut(s) | 131, 248, 692, 779, 908, 1316, 1367, 1388 |
| Tru9I | TTAA | 8 cut(s) | 131, 248, 692, 779, 908, 1316, 1367, 1388 |
| TscAI | CASTG | 1 cut(s) | 1510 |
| TspDTI | ATGAA | 4 cut(s) | 84, 873, 1152, 1242 |
| TspRI | CASTG | 1 cut(s) | 1510 |
| Vha464I | CTTAAG | 1 cut(s) | 907 |
| VpaK11BI | GGWCC | 4 cut(s) | 353, 584, 1002, 1610 |
| XceI | RCATGY | 1 cut(s) | 1027 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 444 |
| XmnI | GAANNNNTTC | 3 cut(s) | 200, 372, 1474 |
| XspI | CTAG | 5 cut(s) | 173, 722, 1277, 1283, 1332 |