Rroxscaffold_1G00003820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000274
Physical Location & Seq
Reverse (-)
4990851 .. 4991819
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00003820.1

Sequence Viewer

Length: 333 bp
ATGGGATCTGCACGGTCGAAGAATCTGCAGCACAGCAGCTCAATCTCCACCTCACTGCATAGTGGCAAAAGAAACTCCATCGACAACTCCATCACACAAGGACTCACAGGTTCCGGACCCCACAGTCCACATGCCCACGGTGGCGGAAATGGAACAACAAGCCGACATGTTTCGGATAGTGAAAAATTGGATTGCGGACTTTTTGTAATGTACACAATGGAGAAAATTTTGAAAAAAGGGAGAGTTCCAAAGAAGCTCACAAAGGATGATATTTTGAATTTTAGAGCTCATGTTGTAAAGTCATTTGCAGAAAGTAGGCACAGCTGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.97

Weight (kDa)

10.08

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 123
AccIII TCCGGA 1 cut(s) 113
AciI CCGC 2 cut(s) 144, 195
AclWI GGATC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 225, 277
AfaI GTAC 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 232, 277
AluBI AGCT 4 cut(s) 39, 256, 287, 324
AluI AGCT 4 cut(s) 39, 256, 287, 324
Alw21I GWGCWC 1 cut(s) 289
AlwI GGATC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 113
ApeKI GCWGC 2 cut(s) 28, 36
ApoI RAATTY 2 cut(s) 225, 277
AspS9I GGNCC 1 cut(s) 116
AvaII GGWCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 2 cut(s) 40, 48
BccI CCATC 2 cut(s) 86, 98
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 29, 37
BlsI GCNGC 2 cut(s) 30, 38
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 112, 118
BsaJI CCNNGG 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 113
BseAI TCCGGA 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 136
BseGI GGATG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 40, 48
Bsh1285I CGRYCG 1 cut(s) 17
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 289
BsiSI CCGG 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 289
Bsp13I TCCGGA 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 210
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 2 cut(s) 144, 195
BspEI TCCGGA 1 cut(s) 113
BspLI GGNNCC 2 cut(s) 112, 118
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 13
BsrGI TGTACA 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 136
BssMI GATC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 15, 125, 140
BstAUI TGTACA 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 136
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstMCI CGRYCG 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 134, 170
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 40, 48
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 136
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 116
Csp6I GTAC 1 cut(s) 211
CviAII CATG 3 cut(s) 131, 167, 290
CviJI RGCY 5 cut(s) 39, 162, 256, 287, 324
CviKI_1 RGCY 5 cut(s) 39, 162, 256, 287, 324
CviQI GTAC 1 cut(s) 211
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
DrdI GACNNNNNNGTC 1 cut(s) 123
DseDI GACNNNNNNGTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 3 cut(s) 134, 170, 293
FaiI YATR 4 cut(s) 60, 132, 168, 291
FatI CATG 3 cut(s) 130, 166, 289
Fnu4HI GCNGC 2 cut(s) 29, 37
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 29, 37
GluI GCNGC 2 cut(s) 29, 37
HapII CCGG 1 cut(s) 114
Hin1II CATG 3 cut(s) 134, 170, 293
HinfI GANTC 2 cut(s) 22, 102
HpaII CCGG 1 cut(s) 114
Hpy166II GTNNAC 2 cut(s) 128, 213
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 114
Hpy8I GTNNAC 2 cut(s) 128, 213
HpyCH4III ACNGT 3 cut(s) 15, 125, 140
HpyCH4V TGCA 4 cut(s) 11, 28, 58, 308
Hsp92II CATG 3 cut(s) 134, 170, 293
Kpn2I TCCGGA 1 cut(s) 113
Kzo9I GATC 1 cut(s) 5
LpnPI CCDG 3 cut(s) 93, 127, 310
Lsp1109I GCAGC 2 cut(s) 40, 48
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MboII GAAGA 1 cut(s) 31
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 3 cut(s) 185, 225, 277
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 1 cut(s) 61
MroI TCCGGA 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 324
MspI CCGG 1 cut(s) 114
NdeII GATC 1 cut(s) 5
NlaIII CATG 3 cut(s) 134, 170, 293
NlaIV GGNNCC 2 cut(s) 112, 118
NspI RCATGY 2 cut(s) 134, 170
PciI ACATGT 1 cut(s) 166
PfeI GAWTC 1 cut(s) 22
PkrI GCNGC 2 cut(s) 30, 38
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PscI ACATGT 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 112, 118
PspPI GGNCC 1 cut(s) 116
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 324
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SacI GAGCTC 1 cut(s) 289
SatI GCNGC 2 cut(s) 29, 37
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 289
SetI ASST 6 cut(s) 41, 53, 112, 258, 289, 326
SfcI CTRYAG 1 cut(s) 26
SgeI CNNG 9 cut(s) 24, 110, 120, 126, 143, 149, 171, 179, 302
SinI GGWCC 1 cut(s) 116
Sse9I AATT 3 cut(s) 185, 225, 277
SsiI CCGC 2 cut(s) 144, 195
SstI GAGCTC 1 cut(s) 289
TaaI ACNGT 3 cut(s) 15, 125, 140
TaqI TCGA 2 cut(s) 17, 81
TasI AATT 3 cut(s) 185, 225, 277
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 22
TscAI CASTG 1 cut(s) 60
TseI GCWGC 2 cut(s) 28, 36
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 225, 277
XceI RCATGY 2 cut(s) 134, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.