FvH4_3g25201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000274
Physical Location & Seq
Forward (+)
18176250 .. 18180687
4438 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25201.t1

Sequence Viewer

Length: 2370 bp
ATGAGAAACATGGCAGAGGACTATGAATCAAGGCAGACAGAACTACAGGAGAAGATGGAAAATGCAGTACAGGATTTGATGATTGAGAGGTTAATTAACAATGAAACAAGGTTGCAGAATGAAAAATTCAATAAAGAACTGAAGAAGTTGCAAGCTTTGGTGGCGGCATTAGCACCAAACTCTCAAGATGAGAGAGCTCTGGAAAGCAATGAAGATGATCAGGATCCTGAAGGAGGAGCAAACGAGGGAGGAAAAAACAATGAAGATCTGAAGGACAAGGAAGCTGATAAGGCAGCTGAAAAAGATGATGATAAGGAAGCGGATAAGGATCCTGAAGGAACTGGCAAGGAAGATGAAGCAGCTGAGAAAATGGAGGAGGAGGAGGAGAAAGATGCCAATGCTGAAGATAAGAGTGAGGCAGCAGCGAACATAGCTCAGCTTTCAATGCAAAATTCGGAAGAATTAGATCTTCAAGCATTAGAAGAGGTTGAGAGAGAGCTAAAAAAGAACATGGCTGATGAGGATGATAAAGAGAAGGAAGAGGCAACAGAGAAAGTTGCAAGCGCTCATAAAAAAGAGATGAGTGAGCCTCAGATTCCAACCCAAAATTCAGAAGACTTATATGTTGAAGAATTAGAACGGGTTGAGGAAGAGCTTAAAAAGAAGAAGAAAGCAGACGATGAAACGAAGGCTTACAGTGAGCAACCACTAGAGTCACCACCAAGGAGGACGGTTGCGGAAGAAGCGCGTTGGTCGCCGAAAACACCGGTGACAGAGATGCCTTCTTTTGATTTGGGAATCTCTCCCTGGGTATCTTGGAATAGCCCATTGGTGACTGGAATAATAACCATACCAGAGAAGAATTTCAATACTCCCTCTAGCCCTCAAATCATTGACCTTACGATGATGGAACGAGAACCTGCAAAATACCAGATGATCGTATCTCCACAGGTAGCAGTTCCTGTCATTAATCTAGATGAAGAGGAGAGTGATATTGAGATTGAGCTGACAGAGGAAAACTCTGGAAGGACAGCATCATCCTTGGGGATGTATTCATATGTTGCTCGGATCAAGAACAAGCAGAGAAGGCCGGCTAAAAGAGATGATATATACTGGTGGGGGGAGGTTAAAAACACCAGAGAGAAGAAGGCCAGAGAAATAGCAGAAGAAAGGAAGAAAAATCTGGAGCAGAAGAACAAGATAGCTGAAGGAGAAGAACTGAACGAGTATGGAGATGTAATTCATACTATTGGTGCTGATGAAATGGAACCAATGCCAATACAGATTGTGCCAACCACCGCGAGAGCAATACGGGTTATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCCATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTAGATGACGGAGACTTCATATGGGAAGGCCCATTGTATGGTTCAGAGATTACAAAGCTTGATCTGCTGGAGGTTATAATGGACAACGCAGTGGCATGCAATGTAATAGACTGCTTTGGTGCCATTATAGTTGACGAAATTTCTCAGCAAGATTCTCAGTCTGTCGTTGTTCCTAGGGTTATGCAGACCATAGCATGGCACTCAACAGAACATCTTCATGGAAGGAACATGCACCACTACTTCCTTGACAAGTTATATGACTACTTGGGAGAAGCGACGATGATTTTCTTTCCAATGACAAGTGAAGTAAGGTTTCACCATACACTCCTTGTCTTCCAAGTTCAACCCCCCCATTTCTACCACCTAGATTCAATGAAGGGAAGATCAACAGATGGGAATAGGGGACAGACATGGAAAGATGCCAAAAAAATGGCAACTATGGTTGAGTTATGGATGTCTGCAGTCAAAGAACAAGCAGATGACATGCTGAAGAAAGGCTCCCGCAGAAAAATGGACATGAACAGGAGCAGTTCAGAGAAGCTTGTAATGAAAAAAGTAAAGCTTACGGAGAGAGAGAGAAAGTCCATACAATGGGTCAAGAATAACTATATTGAAAACATCCCAATCAGTTGTCAAATAAATGGACCACTACCTCAGCAACATCCCACATCATTGGATTGTGGGATATTCGTTATGTACTATATGGACAAACTTTCCAAGGAGGAAACGTTTGACAGAACACTGAAGAAGAATGATGTTTTGAAGCTTAGAGCAGAAGTGGTGAAGAGGTTTCTTAACCATAGGCATAGTTGCGTGCCGCTGCACCGTAACGGCAGCGTGCCGCTGCACCGTAACGGCAGCGTCCCGCTGCCAGGTCTTTTAGTCAAAGGAGGCTGCAATGGAAATGACGATCGAGCAAGATCAACAGGCATTGAAATGGAAGGGATTGGGTTAATGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

790

Amino Acids

90.26

Weight (kDa)

5.0

Isoelectric Point (pI)

54.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1484
Acc36I ACCTGC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 1526
AccB7I CCANNNNNTGG 3 cut(s) 1445, 1602, 1998
AccII CGCG 2 cut(s) 748, 1301
AciI CCGC 9 cut(s) 164, 320, 737, 1299, 1331, 1909, 2225, 2249, 2273
AclI AACGTT 1 cut(s) 2135
AclWI GGATC 7 cut(s) 218, 231, 323, 336, 1076, 1361, 1374
AcsI RAATTY 5 cut(s) 125, 451, 607, 862, 1545
AcuI CTGAAG 8 cut(s) 161, 249, 290, 354, 423, 1227, 1916, 2171
AfaI GTAC 2 cut(s) 69, 2105
AfeI AGCGCT 1 cut(s) 565
AfiI CCNNNNNNNGG 5 cut(s) 233, 1445, 1602, 1998, 2279
AgeI ACCGGT 1 cut(s) 766
AjnI CCWGG 2 cut(s) 806, 2278
AjuI GAANNNNNNNTTGG 4 cut(s) 592, 624, 812, 844
Alw21I GWGCWC 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 1413
AlwI GGATC 7 cut(s) 218, 231, 323, 336, 1076, 1361, 1374
AlwNI CAGNNNCTG 1 cut(s) 962
Aor51HI AGCGCT 1 cut(s) 565
AoxI GGCC 3 cut(s) 1088, 1149, 1435
ApoI RAATTY 5 cut(s) 125, 451, 607, 862, 1545
AseI ATTAAT 1 cut(s) 969
AsiGI ACCGGT 1 cut(s) 766
Asp700I GAANNNNTTC 2 cut(s) 863, 1620
AspA2I CCTAGG 1 cut(s) 1580
AspLEI GCGC 2 cut(s) 566, 748
AspS9I GGNCC 2 cut(s) 1436, 2051
AsuHPI GGTGA 5 cut(s) 708, 781, 844, 1715, 2200
AvaII GGWCC 1 cut(s) 2051
AvrII CCTAGG 1 cut(s) 1580
BamHI GGATCC 3 cut(s) 223, 328, 1366
BanI GGYRCC 1 cut(s) 1526
BanII GRGCYC 1 cut(s) 199
BbsI GAAGAC 2 cut(s) 621, 1732
Bbv12I GWGCWC 1 cut(s) 199
BbvCI CCTCAGC 1 cut(s) 2061
BccI CCATC 3 cut(s) 49, 901, 1793
BceAI ACGGC 2 cut(s) 2254, 2278
BciT130I CCWGG 2 cut(s) 808, 2280
BclI TGATCA 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 1413
BfaI CTAG 5 cut(s) 710, 879, 974, 1581, 1772
BfmI CTRYAG 2 cut(s) 44, 1866
BfoI RGCGCY 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 928
BglII AGATCT 2 cut(s) 265, 466
BlnI CCTAGG 1 cut(s) 1580
BlpI GCTNAGC 1 cut(s) 435
Bme1390I CCNGG 2 cut(s) 808, 2280
Bme18I GGWCC 1 cut(s) 2051
BmgT120I GGNCC 2 cut(s) 1436, 2051
BmiI GGNNCC 6 cut(s) 225, 330, 1269, 1368, 1528, 1906
BmrFI CCNGG 2 cut(s) 808, 2280
BmsI GCATC 4 cut(s) 382, 768, 1043, 1816
BpiI GAAGAC 2 cut(s) 621, 1732
BplI GAGNNNNNCTC 4 cut(s) 574, 606, 1004, 1036
BpmI CTGGAG 2 cut(s) 1205, 1496
Bpu10I CCTNAGC 1 cut(s) 2061
Bpu1102I GCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 168
BsaBI GATNNNNATC 2 cut(s) 222, 327
BsaJI CCNNGG 6 cut(s) 722, 806, 807, 1041, 1580, 2124
BsaWI WCCGGW 1 cut(s) 766
BsaXI ACNNNNNCTCC 2 cut(s) 2120, 2150
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 1445, 1602, 1998, 2279
Bse118I RCCGGY 2 cut(s) 766, 1090
Bse1I ACTGG 3 cut(s) 346, 841, 1118
Bse3DI GCAATG 3 cut(s) 214, 1513, 2311
Bse8I GATNNNNATC 2 cut(s) 222, 327
BseBI CCWGG 2 cut(s) 808, 2280
BseDI CCNNGG 6 cut(s) 722, 806, 807, 1041, 1580, 2124
BseGI GGATG 6 cut(s) 529, 1037, 1053, 1866, 2025, 2068
BseJI GATNNNNATC 2 cut(s) 222, 327
BseLI CCNNNNNNNGG 5 cut(s) 233, 1445, 1602, 1998, 2279
BseMI GCAATG 3 cut(s) 214, 1513, 2311
BseMII CTCAG 7 cut(s) 354, 449, 605, 1337, 1565, 1577, 2075
BseNI ACTGG 3 cut(s) 346, 841, 1118
BseRI GAGGAG 6 cut(s) 249, 389, 392, 395, 398, 998
BseYI CCCAGC 1 cut(s) 1398
BsgI GTGCAG 2 cut(s) 2213, 2237
Bsh1236I CGCG 2 cut(s) 748, 1301
Bsh1285I CGRYCG 1 cut(s) 2320
BshFI GGCC 3 cut(s) 1090, 1151, 1437
BshNI GGYRCC 1 cut(s) 1526
BshTI ACCGGT 1 cut(s) 766
BsiEI CGRYCG 1 cut(s) 2320
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 2 cut(s) 767, 1091
BslFI GGGAC 2 cut(s) 1824, 2255
BslI CCNNNNNNNGG 5 cut(s) 233, 1445, 1602, 1998, 2279
BsmAI GTCTC 1 cut(s) 1413
BsmFI GGGAC 2 cut(s) 1824, 2255
BsmI GAATGC 1 cut(s) 1352
BsnI GGCC 3 cut(s) 1090, 1151, 1437
Bsp1286I GDGCHC 1 cut(s) 199
Bsp1720I GCTNAGC 1 cut(s) 435
BspACI CCGC 9 cut(s) 164, 320, 737, 1299, 1331, 1909, 2225, 2249, 2273
BspANI GGCC 3 cut(s) 1090, 1151, 1437
BspCNI CTCAG 7 cut(s) 355, 448, 604, 1336, 1564, 1576, 2074
BspFNI CGCG 2 cut(s) 748, 1301
BspLI GGNNCC 6 cut(s) 225, 330, 1269, 1368, 1528, 1906
BspMAI CTGCAG 1 cut(s) 1870
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 7 cut(s) 218, 231, 323, 336, 1076, 1361, 1374
BspQI GCTCTTC 1 cut(s) 645
BspT107I GGYRCC 1 cut(s) 1526
BsrDI GCAATG 3 cut(s) 214, 1513, 2311
BsrFI RCCGGY 2 cut(s) 766, 1090
BsrI ACTGG 3 cut(s) 346, 841, 1118
BssAI RCCGGY 2 cut(s) 766, 1090
BssECI CCNNGG 6 cut(s) 722, 806, 807, 1041, 1580, 2124
BssT1I CCWWGG 4 cut(s) 722, 1041, 1580, 2124
Bst2UI CCWGG 2 cut(s) 808, 2280
Bst4CI ACNGT 4 cut(s) 698, 733, 2234, 2258
Bst6I CTCTTC 5 cut(s) 477, 534, 645, 975, 2186
BstC8I GCNNGC 6 cut(s) 153, 562, 1092, 1504, 2222, 2246
BstDEI CTNAG 9 cut(s) 363, 435, 591, 1323, 1408, 1551, 1563, 2061, 2174
BstENI CCTNNNNNAGG 1 cut(s) 231
BstF5I GGATG 6 cut(s) 529, 1037, 1053, 1866, 2025, 2068
BstFNI CGCG 2 cut(s) 748, 1301
BstH2I RGCGCY 1 cut(s) 567
BstHHI GCGC 2 cut(s) 566, 748
BstMAI GTCTC 1 cut(s) 1413
BstMCI CGRYCG 1 cut(s) 2320
BstNI CCWGG 2 cut(s) 808, 2280
BstNSI RCATGY 3 cut(s) 1506, 1639, 1894
BstSCI CCNGG 2 cut(s) 806, 2278
BstSFI CTRYAG 2 cut(s) 44, 1866
BstUI CGCG 2 cut(s) 748, 1301
BstV2I GAAGAC 2 cut(s) 621, 1732
BstX2I RGATCY 5 cut(s) 223, 265, 328, 466, 1366
BstXI CCANNNNNNTGG 2 cut(s) 1837, 2080
BstYI RGATCY 5 cut(s) 223, 265, 328, 466, 1366
BsuRI GGCC 3 cut(s) 1090, 1151, 1437
BtsCI GGATG 6 cut(s) 529, 1037, 1053, 1866, 2025, 2068
BtsI GCAGTG 1 cut(s) 1503
BtsIMutI CAGTG 3 cut(s) 703, 1503, 2147
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 6 cut(s) 153, 562, 1092, 1504, 2222, 2246
CaiI CAGNNNCTG 1 cut(s) 962
CfoI GCGC 2 cut(s) 566, 748
Cfr10I RCCGGY 2 cut(s) 766, 1090
Cfr13I GGNCC 2 cut(s) 1436, 2051
CseI GACGC 1 cut(s) 2257
Csp6I GTAC 2 cut(s) 68, 2104
CspAI ACCGGT 1 cut(s) 766
CviQI GTAC 2 cut(s) 68, 2104
DdeI CTNAG 9 cut(s) 363, 435, 591, 1323, 1408, 1551, 1563, 2061, 2174
Eam1104I CTCTTC 5 cut(s) 477, 534, 645, 975, 2186
EarI CTCTTC 5 cut(s) 477, 534, 645, 975, 2186
Ecl136II GAGCTC 1 cut(s) 197
Eco130I CCWWGG 4 cut(s) 722, 1041, 1580, 2124
Eco24I GRGCYC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 2051
Eco47III AGCGCT 1 cut(s) 565
Eco53kI GAGCTC 1 cut(s) 197
Eco57I CTGAAG 8 cut(s) 161, 249, 290, 354, 423, 1227, 1916, 2171
EcoICRI GAGCTC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 806, 2278
EcoT14I CCWWGG 4 cut(s) 722, 1041, 1580, 2124
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 4 cut(s) 722, 1041, 1580, 2124
FalI AAGNNNNNCTT 2 cut(s) 1953, 1985
FaqI GGGAC 2 cut(s) 1824, 2255
FauI CCCGC 2 cut(s) 1916, 2280
FauNDI CATATG 2 cut(s) 1057, 1427
FbaI TGATCA 1 cut(s) 217
FokI GGATG 6 cut(s) 536, 1024, 1060, 1873, 2012, 2055
FriOI GRGCYC 1 cut(s) 199
FspBI CTAG 5 cut(s) 710, 879, 974, 1581, 1772
GlaI GCGC 2 cut(s) 565, 747
GsaI CCCAGC 1 cut(s) 1402
GsuI CTGGAG 2 cut(s) 1205, 1496
HaeII RGCGCY 1 cut(s) 567
HaeIII GGCC 3 cut(s) 1090, 1151, 1437
HapII CCGG 2 cut(s) 767, 1091
HgaI GACGC 1 cut(s) 2257
HhaI GCGC 2 cut(s) 566, 748
Hin6I GCGC 2 cut(s) 564, 746
HinP1I GCGC 2 cut(s) 564, 746
HincII GTYRAC 1 cut(s) 1540
HindII GTYRAC 1 cut(s) 1540
HindIII AAGCTT 6 cut(s) 153, 1405, 1463, 1946, 1967, 2171
HinfI GANTC 7 cut(s) 26, 595, 713, 798, 1321, 1559, 1775
HpaII CCGG 2 cut(s) 767, 1091
HphI GGTGA 5 cut(s) 708, 781, 844, 1715, 2200
Hpy166II GTNNAC 1 cut(s) 1540
Hpy188I TCNGA 8 cut(s) 270, 457, 594, 613, 1068, 1326, 1453, 1942
Hpy8I GTNNAC 1 cut(s) 1540
Hpy99I CGWCG 1 cut(s) 1687
HpyCH4III ACNGT 4 cut(s) 698, 733, 2234, 2258
HpyCH4IV ACGT 1 cut(s) 2135
HpyF3I CTNAG 9 cut(s) 363, 435, 591, 1323, 1408, 1551, 1563, 2061, 2174
HpySE526I ACGT 1 cut(s) 2135
HspAI GCGC 2 cut(s) 564, 746
KroI GCCGGC 1 cut(s) 1090
KroNI GCCGGC 1 cut(s) 1092
Ksp22I TGATCA 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 4 cut(s) 236, 1186, 1910, 1932
LweI GCATC 4 cut(s) 382, 768, 1043, 1816
MaeI CTAG 5 cut(s) 710, 879, 974, 1581, 1772
MaeII ACGT 1 cut(s) 2135
MaeIII GTNAC 5 cut(s) 714, 769, 832, 2234, 2258
MflI RGATCY 5 cut(s) 223, 265, 328, 466, 1366
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 9 cut(s) 93, 125, 451, 461, 607, 632, 862, 1239, 1545
MlyI GAGTC 2 cut(s) 722, 1315
MmeI TCCRAC 1 cut(s) 623
MroNI GCCGGC 1 cut(s) 1090
MroXI GAANNNNTTC 2 cut(s) 863, 1620
MseI TTAA 7 cut(s) 92, 96, 657, 969, 1128, 2202, 2360
MslI CAYNNNNRTG 3 cut(s) 1357, 1623, 2342
MspA1I CMGCKG 5 cut(s) 296, 362, 2227, 2251, 2275
MspI CCGG 2 cut(s) 767, 1091
MspR9I CCNGG 2 cut(s) 808, 2280
Mva1269I GAATGC 1 cut(s) 1352
MvaI CCWGG 2 cut(s) 808, 2280
MvnI CGCG 2 cut(s) 748, 1301
NaeI GCCGGC 1 cut(s) 1092
NdeI CATATG 2 cut(s) 1057, 1427
NgoMIV GCCGGC 1 cut(s) 1090
NlaIV GGNNCC 6 cut(s) 225, 330, 1269, 1368, 1528, 1906
NmuCI GTSAC 3 cut(s) 714, 769, 832
NspI RCATGY 3 cut(s) 1506, 1639, 1894
PacI TTAATTAA 1 cut(s) 96
PaeI GCATGC 1 cut(s) 1506
PasI CCCWGGG 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 645
PctI GAATGC 1 cut(s) 1352
PdiI GCCGGC 1 cut(s) 1092
PdmI GAANNNNTTC 2 cut(s) 863, 1620
PfeI GAWTC 5 cut(s) 26, 595, 798, 1559, 1775
PflMI CCANNNNNTGG 3 cut(s) 1445, 1602, 1998
PinAI ACCGGT 1 cut(s) 766
Ple19I CGATCG 1 cut(s) 2320
PleI GAGTC 2 cut(s) 721, 1315
PpsI GAGTC 2 cut(s) 721, 1315
PshBI ATTAAT 1 cut(s) 969
PsiI TTATAA 1 cut(s) 1484
Psp124BI GAGCTC 1 cut(s) 199
Psp1406I AACGTT 1 cut(s) 2135
Psp6I CCWGG 2 cut(s) 806, 2278
PspFI CCCAGC 1 cut(s) 1398
PspGI CCWGG 2 cut(s) 806, 2278
PspN4I GGNNCC 6 cut(s) 225, 330, 1269, 1368, 1528, 1906
PspPI GGNCC 2 cut(s) 1436, 2051
PstI CTGCAG 1 cut(s) 1870
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 5 cut(s) 223, 265, 328, 466, 1366
PvuI CGATCG 1 cut(s) 2320
PvuII CAGCTG 2 cut(s) 296, 362
RsaI GTAC 2 cut(s) 69, 2105
RsaNI GTAC 2 cut(s) 68, 2104
RseI CAYNNNNRTG 3 cut(s) 1357, 1623, 2342
SacI GAGCTC 1 cut(s) 199
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 7 cut(s) 92, 96, 657, 969, 1128, 2202, 2360
Sau96I GGNCC 2 cut(s) 1436, 2051
SchI GAGTC 2 cut(s) 722, 1315
ScrFI CCNGG 2 cut(s) 808, 2280
SduI GDGCHC 1 cut(s) 199
SfaNI GCATC 4 cut(s) 382, 768, 1043, 1816
SfcI CTRYAG 2 cut(s) 44, 1866
SgrAI CRCCGGYG 1 cut(s) 766
SinI GGWCC 1 cut(s) 2051
SmiMI CAYNNNNRTG 3 cut(s) 1357, 1623, 2342
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
SphI GCATGC 1 cut(s) 1506
Sse9I AATT 9 cut(s) 93, 125, 451, 461, 607, 632, 862, 1239, 1545
SsiI CCGC 9 cut(s) 164, 320, 737, 1299, 1331, 1909, 2225, 2249, 2273
SspMI CTAG 5 cut(s) 710, 879, 974, 1581, 1772
SstI GAGCTC 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 806, 2278
StyI CCWWGG 4 cut(s) 722, 1041, 1580, 2124
TaaI ACNGT 4 cut(s) 698, 733, 2234, 2258
TaiI ACGT 1 cut(s) 2138
TaqI TCGA 1 cut(s) 2320
TasI AATT 9 cut(s) 93, 125, 451, 461, 607, 632, 862, 1239, 1545
TatI WGTACW 2 cut(s) 67, 2103
TauI GCSGC 3 cut(s) 167, 2227, 2251
TfiI GAWTC 5 cut(s) 26, 595, 798, 1559, 1775
Tru1I TTAA 7 cut(s) 92, 96, 657, 969, 1128, 2202, 2360
Tru9I TTAA 7 cut(s) 92, 96, 657, 969, 1128, 2202, 2360
TscAI CASTG 3 cut(s) 703, 1503, 2154
TseFI GTSAC 3 cut(s) 714, 769, 832
Tsp45I GTSAC 3 cut(s) 714, 769, 832
TspGWI ACGGA 2 cut(s) 1431, 1988
TspRI CASTG 3 cut(s) 703, 1503, 2154
Van91I CCANNNNNTGG 3 cut(s) 1445, 1602, 1998
VpaK11BI GGWCC 1 cut(s) 2051
VspI ATTAAT 1 cut(s) 969
XagI CCTNNNNNAGG 1 cut(s) 231
XapI RAATTY 5 cut(s) 125, 451, 607, 862, 1545
XbaI TCTAGA 1 cut(s) 973
XceI RCATGY 3 cut(s) 1506, 1639, 1894
XmaJI CCTAGG 1 cut(s) 1580
XmnI GAANNNNTTC 2 cut(s) 863, 1620
XspI CTAG 5 cut(s) 710, 879, 974, 1581, 1772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.