FvH4_6g34231

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000274
Physical Location & Seq
Forward (+)
27012193 .. 27015379
3187 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34231.t1

Sequence Viewer

Length: 1137 bp
ATGGAAGTGGAAAAGAATGCAGCAGAGACATTGTTTGGGAAAAACAAAAGAGTGACAAAAAAGTGTGTGATGGACGCTTTAAGAGAGCTCAAGGACCAGCAGCCAACAAATGATGAAGAAAGAAGAAAGAAGAGAAAAAATTTGGTTAGGTTGCTCATTTTAGAAATTTGCATAAAGTTTCTATTTGCAAATGGGGGAGGGAGTGTCTCAAATGAGCTGGTAAATGCAGTATGGGGGAACATAGAGAGCTGTGGATGGGCTCAAGAGGTTGGAAGATTTTTGTCGGGTTGTTTAAGACAACGACTAAAATCAAAAGGTAAGGGGTTGAGCGGGTTGAACACAGGAGGCTGTGCATACTTAATTCTGTATTGGCTCTGTGAGAAGACAAACGCCATAAAGCCGATTGAAGGCACAGAGGATGAGGAACATAAGATGAGGAAATGGGACCTCACAAAGCTACCCAAGAAAGCTGAATTCAAAACATTGAAGCAACTGTTCGCTGGAATCATGTCTGATCCAGAAGAAACAGATTGTGAATCTGAAGCAGAAGAAGAAGAAACAGTGCAGAAGAAACTGATGGATAAAGAAGAAACATGGCAGGCAGCAGAGGAAGGAGAAAGGCCACCATCCTCTCTAATATCCGGTCAAAGCCAAAAAGCAAAGGAGGTAGCAGTTCCTGTCATTAATCTAGATGAAGAGGAGAGTGATATCGAGATTGAGCTGACAGAGGAAAACTCTGGAATGACAGCATCATCCTTAGGGATGTATTCATATGTTGCTCGGATCAAGAACAAGCAGAGAAGGCCGGCTAAAAGAGATGATACATACTGGTGGGGAGAGGTTAAAAACACCAGAGAGAAGAAGGCCAGAGAAATAGCAGAAGAAAGGAAGAAAAATCTGGAGCAGAAGAACAAGATAGCTGAAGGAGAAGAACTGAACAAGTATGAAGATGTAATTCATACTATTGGTGATAATGAAATGGAACCAATGCCAATACAGATTGTGCCAACCACCGCAAGAGCAATACGGGCTATGACTCAGAAGGCGGTTTGGACAACTTCCAAAGCATTCAAGTGCATGGATCTATTGACAAAGAAAAAATGGACAACTTGCTGGGAAAGCTTCGATGACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

379

Amino Acids

43.23

Weight (kDa)

5.89

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 330
AciI CCGC 3 cut(s) 330, 1014, 1046
AclWI GGATC 3 cut(s) 509, 791, 1089
AcsI RAATTY 3 cut(s) 139, 165, 473
AcuI CTGAAG 2 cut(s) 561, 942
AfiI CCNNNNNNNGG 1 cut(s) 407
AgsI TTSAA 5 cut(s) 337, 407, 478, 487, 1072
AluBI AGCT 8 cut(s) 88, 217, 249, 457, 470, 721, 920, 1122
AluI AGCT 8 cut(s) 88, 217, 249, 457, 470, 721, 920, 1122
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 20, 211
AlwI GGATC 3 cut(s) 509, 791, 1089
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 3 cut(s) 620, 803, 864
ApeKI GCWGC 3 cut(s) 20, 100, 602
ApoI RAATTY 3 cut(s) 139, 165, 473
AseI ATTAAT 1 cut(s) 684
AspS9I GGNCC 2 cut(s) 94, 445
AsuHPI GGTGA 1 cut(s) 980
AvaII GGWCC 2 cut(s) 94, 445
AxyI CCTNAGG 1 cut(s) 757
BanII GRGCYC 2 cut(s) 90, 262
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 3 cut(s) 32, 112, 614
BccI CCATC 4 cut(s) 64, 249, 571, 634
BcoDI GTCTC 2 cut(s) 20, 211
BfaI CTAG 1 cut(s) 689
BisI GCNGC 3 cut(s) 21, 101, 603
BlsI GCNGC 3 cut(s) 22, 102, 604
Bme18I GGWCC 2 cut(s) 94, 445
BmgT120I GGNCC 2 cut(s) 94, 445
BmiI GGNNCC 2 cut(s) 446, 984
BmsI GCATC 1 cut(s) 758
BpiI GAAGAC 1 cut(s) 389
BplI GAGNNNNNCTC 2 cut(s) 719, 751
BpmI CTGGAG 1 cut(s) 920
BpuEI CTTGAG 2 cut(s) 74, 246
BsaWI WCCGGW 1 cut(s) 641
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 407
Bse118I RCCGGY 1 cut(s) 805
Bse1I ACTGG 1 cut(s) 833
Bse21I CCTNAGG 1 cut(s) 757
BseGI GGATG 5 cut(s) 260, 424, 626, 752, 768
BseLI CCNNNNNNNGG 1 cut(s) 407
BseMII CTCAG 1 cut(s) 1052
BseNI ACTGG 1 cut(s) 833
BseRI GAGGAG 1 cut(s) 713
BseXI GCAGC 3 cut(s) 32, 112, 614
BseYI CCCAGC 1 cut(s) 1113
BsgI GTGCAG 1 cut(s) 584
BshFI GGCC 3 cut(s) 622, 805, 866
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 642, 806
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 20, 211
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 2 cut(s) 22, 1067
BsnI GGCC 3 cut(s) 622, 805, 866
Bsp1286I GDGCHC 2 cut(s) 90, 262
Bsp143I GATC 3 cut(s) 514, 783, 1081
BspACI CCGC 3 cut(s) 330, 1014, 1046
BspANI GGCC 3 cut(s) 622, 805, 866
BspCNI CTCAG 1 cut(s) 1051
BspLI GGNNCC 2 cut(s) 446, 984
BspPI GGATC 3 cut(s) 509, 791, 1089
BsrBI CCGCTC 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 805
BsrI ACTGG 1 cut(s) 833
BssAI RCCGGY 1 cut(s) 805
BssMI GATC 3 cut(s) 514, 783, 1081
Bst4CI ACNGT 2 cut(s) 495, 562
Bst6I CTCTTC 2 cut(s) 125, 690
BstC8I GCNNGC 2 cut(s) 600, 807
BstDEI CTNAG 2 cut(s) 757, 1038
BstF5I GGATG 5 cut(s) 260, 424, 626, 752, 768
BstKTI GATC 3 cut(s) 517, 786, 1084
BstMAI GTCTC 2 cut(s) 20, 211
BstMBI GATC 3 cut(s) 514, 783, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 802, 1028, 1119
BstV1I GCAGC 3 cut(s) 32, 112, 614
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 1081
BstYI RGATCY 1 cut(s) 1081
Bsu36I CCTNAGG 1 cut(s) 757
BsuRI GGCC 3 cut(s) 622, 805, 866
BtsCI GGATG 5 cut(s) 260, 424, 626, 752, 768
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 2 cut(s) 600, 807
CaiI CAGNNNCTG 1 cut(s) 677
Cfr10I RCCGGY 1 cut(s) 805
Cfr13I GGNCC 2 cut(s) 94, 445
CseI GACGC 1 cut(s) 83
CviAII CATG 3 cut(s) 508, 594, 1078
DdeI CTNAG 2 cut(s) 757, 1038
DpnI GATC 3 cut(s) 516, 785, 1083
DpnII GATC 3 cut(s) 514, 783, 1081
Eam1104I CTCTTC 2 cut(s) 125, 690
EarI CTCTTC 2 cut(s) 125, 690
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 2 cut(s) 90, 262
Eco32I GATATC 1 cut(s) 709
Eco47I GGWCC 2 cut(s) 94, 445
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 2 cut(s) 561, 942
Eco81I CCTNAGG 1 cut(s) 757
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 473
EcoRV GATATC 1 cut(s) 709
EcoT38I GRGCYC 2 cut(s) 90, 262
FaeI CATG 3 cut(s) 511, 597, 1081
FaqI GGGAC 1 cut(s) 458
FatI CATG 3 cut(s) 507, 593, 1077
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 772
Fnu4HI GCNGC 3 cut(s) 21, 101, 603
FokI GGATG 5 cut(s) 267, 431, 613, 739, 775
FriOI GRGCYC 2 cut(s) 90, 262
Fsp4HI GCNGC 3 cut(s) 21, 101, 603
FspBI CTAG 1 cut(s) 689
GluI GCNGC 3 cut(s) 21, 101, 603
GsaI CCCAGC 1 cut(s) 1117
GsuI CTGGAG 1 cut(s) 920
HaeIII GGCC 3 cut(s) 622, 805, 866
HapII CCGG 2 cut(s) 642, 806
HgaI GACGC 1 cut(s) 83
Hin1II CATG 3 cut(s) 511, 597, 1081
HindIII AAGCTT 1 cut(s) 1120
HinfI GANTC 3 cut(s) 504, 536, 1036
HpaII CCGG 2 cut(s) 642, 806
HphI GGTGA 1 cut(s) 980
Hpy188I TCNGA 4 cut(s) 514, 541, 783, 1041
Hpy188III TCNNGA 7 cut(s) 263, 518, 689, 712, 738, 787, 899
HpyAV CCTTC 6 cut(s) 401, 605, 795, 856, 917, 1036
HpyCH4III ACNGT 2 cut(s) 495, 562
HpyCH4V TGCA 7 cut(s) 20, 171, 188, 227, 353, 565, 1077
HpyF10VI GCNNNNNNNGC 3 cut(s) 802, 1028, 1119
HpyF3I CTNAG 2 cut(s) 757, 1038
Hsp92II CATG 3 cut(s) 511, 597, 1081
KroI GCCGGC 1 cut(s) 805
KroNI GCCGGC 1 cut(s) 807
Kzo9I GATC 3 cut(s) 514, 783, 1081
LmnI GCTCC 1 cut(s) 901
Lsp1109I GCAGC 3 cut(s) 32, 112, 614
LweI GCATC 1 cut(s) 758
MaeI CTAG 1 cut(s) 689
MaeIII GTNAC 1 cut(s) 52
MalI GATC 3 cut(s) 516, 785, 1083
MbiI CCGCTC 1 cut(s) 330
MboI GATC 3 cut(s) 514, 783, 1081
MflI RGATCY 1 cut(s) 1081
MhlI GDGCHC 2 cut(s) 90, 262
MluCI AATT 5 cut(s) 139, 165, 360, 473, 954
MlyI GAGTC 1 cut(s) 1030
MmeI TCCRAC 1 cut(s) 250
MroNI GCCGGC 1 cut(s) 805
MseI TTAA 5 cut(s) 80, 293, 359, 684, 843
MslI CAYNNNNRTG 2 cut(s) 829, 1072
MspI CCGG 2 cut(s) 642, 806
Mva1269I GAATGC 2 cut(s) 22, 1067
MwoI GCNNNNNNNGC 3 cut(s) 802, 1028, 1119
NaeI GCCGGC 1 cut(s) 807
NdeI CATATG 1 cut(s) 772
NdeII GATC 3 cut(s) 514, 783, 1081
NgoMIV GCCGGC 1 cut(s) 805
NlaIII CATG 3 cut(s) 511, 597, 1081
NlaIV GGNNCC 2 cut(s) 446, 984
NmuCI GTSAC 1 cut(s) 52
PctI GAATGC 2 cut(s) 22, 1067
PdiI GCCGGC 1 cut(s) 807
PfeI GAWTC 2 cut(s) 504, 536
PkrI GCNGC 3 cut(s) 22, 102, 604
PleI GAGTC 1 cut(s) 1030
PpsI GAGTC 1 cut(s) 1030
PpuMI RGGWCCY 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 684
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 1113
PspN4I GGNNCC 2 cut(s) 446, 984
PspPI GGNCC 2 cut(s) 94, 445
PspPPI RGGWCCY 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 1081
RseI CAYNNNNRTG 2 cut(s) 829, 1072
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 5 cut(s) 80, 293, 359, 684, 843
SatI GCNGC 3 cut(s) 21, 101, 603
Sau3AI GATC 3 cut(s) 514, 783, 1081
Sau96I GGNCC 2 cut(s) 94, 445
SchI GAGTC 1 cut(s) 1030
SduI GDGCHC 2 cut(s) 90, 262
SfaNI GCATC 1 cut(s) 758
SinI GGWCC 2 cut(s) 94, 445
SmiMI CAYNNNNRTG 2 cut(s) 829, 1072
SmlI CTYRAG 2 cut(s) 89, 261
SmoI CTYRAG 2 cut(s) 89, 261
Sse9I AATT 5 cut(s) 139, 165, 360, 473, 954
SsiI CCGC 3 cut(s) 330, 1014, 1046
SspMI CTAG 1 cut(s) 689
SstI GAGCTC 1 cut(s) 90
TaaI ACNGT 2 cut(s) 495, 562
TaqI TCGA 2 cut(s) 711, 1125
TasI AATT 5 cut(s) 139, 165, 360, 473, 954
TfiI GAWTC 2 cut(s) 504, 536
Tru1I TTAA 5 cut(s) 80, 293, 359, 684, 843
Tru9I TTAA 5 cut(s) 80, 293, 359, 684, 843
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 3 cut(s) 20, 100, 602
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 6 cut(s) 129, 708, 759, 947, 960, 990
TspRI CASTG 1 cut(s) 567
VpaK11BI GGWCC 2 cut(s) 94, 445
VspI ATTAAT 1 cut(s) 684
XapI RAATTY 3 cut(s) 139, 165, 473
XbaI TCTAGA 1 cut(s) 688
XspI CTAG 1 cut(s) 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.