Rmu_sc0002080.1_g000032

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002080.1
OG0000274
Physical Location & Seq
Reverse (-)
131203 .. 133750
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002080.1_g000032.1.cds

Sequence Viewer

Length: 846 bp
atgttggaaatccaggttgaaatggtagagctttggatgactgcagtaaaagaacaagcagatgacatggtagaacaaggttgcaggatgaaatttgatgaaaagaacagtacagaagaacaactgaaaatgatcgaagttgcattgactgaaacagagagagaaagcataaagtggatcaaggataactacaaacgaaaaatggcactgacagaactcaaagacaaccctcagcaaggagaagattccattttgtcattgttcaatgtctttgtcactgcccatgtcgttgcactggtcactggctatgatcatgtaactggaatgggccaaccaaaaagaaaacaaagtgaggaatccagagaagaacaagctgaagaacaaagttcagaagaaacaattgcggaaaagttaaaactgataaaatggaagaaagtaaatgagaggaaaaagcgaaagcagaaaactgaagatgaagaagaatcaagtgaagatgaggaagaaacaactgaagttgaagaagaatctaatgaagaacaagtccggggtgaagaagaatctaatgaagaacaagtccgcagtaagaagaagaataaggataaaaaggagaaaagaagaaacaaggaagaaactgaagatgaagaagaagaatctgatggagaagaagttcatgccaagaagaagaagaaaatggataaaaggaagacaaaaaaagagagtacaaaaaagaaggaagaaactgacgagaaagaagatacaaaggatgctgtagaggaaaaagtcctagggaaaaggaaaagatatgtaaaagagggttatgtgcagtatcgctgcacaatgcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

33.35

Weight (kDa)

5.07

Isoelectric Point (pI)

78.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 404, 577
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 92
AcuI CTGAAG 4 cut(s) 396, 489, 531, 654
AfaI GTAC 2 cut(s) 112, 721
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 3 cut(s) 20, 265, 518
AjnI CCWGG 1 cut(s) 12
AloI GAACNNNNNNTCC 2 cut(s) 651, 683
AluBI AGCT 2 cut(s) 31, 374
AluI AGCT 2 cut(s) 31, 374
AlwI GGATC 1 cut(s) 185
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 1 cut(s) 831
ApoI RAATTY 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 666
AspA2I CCTAGG 1 cut(s) 784
AspS9I GGNCC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 560
AvrII CCTAGG 1 cut(s) 784
BbsI GAAGAC 1 cut(s) 710
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 1 cut(s) 818
BccI CCATC 1 cut(s) 650
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 545
BfaI CTAG 1 cut(s) 785
BfmI CTRYAG 2 cut(s) 42, 768
BisI GCNGC 1 cut(s) 832
BlnI CCTAGG 1 cut(s) 784
BlsI GCNGC 1 cut(s) 833
Bme1390I CCNGG 2 cut(s) 14, 545
BmgT120I GGNCC 1 cut(s) 328
BmrFI CCNGG 2 cut(s) 14, 545
BmsI GCATC 1 cut(s) 754
BpiI GAAGAC 1 cut(s) 710
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 545
BsaJI CCNNGG 2 cut(s) 544, 784
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 3 cut(s) 300, 307, 325
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 544, 784
BseGI GGATG 3 cut(s) 42, 93, 769
BseLI CCNNNNNNNGG 1 cut(s) 236
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 3 cut(s) 300, 307, 325
BseXI GCAGC 1 cut(s) 818
BsgI GTGCAG 2 cut(s) 817, 842
BshFI GGCC 1 cut(s) 330
BsiSI CCGG 1 cut(s) 544
BslI CCNNNNNNNGG 1 cut(s) 236
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 132, 177, 310
BspACI CCGC 2 cut(s) 404, 577
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 1 cut(s) 244
BspMAI CTGCAG 1 cut(s) 46
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 3 cut(s) 300, 307, 325
BssECI CCNNGG 2 cut(s) 544, 784
BssMI GATC 3 cut(s) 132, 177, 310
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 110
BstDEI CTNAG 1 cut(s) 231
BstENI CCTNNNNNAGG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 42, 93, 769
BstKTI GATC 3 cut(s) 135, 180, 313
BstMBI GATC 3 cut(s) 132, 177, 310
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 12, 543
BstSFI CTRYAG 2 cut(s) 42, 768
BstV1I GCAGC 1 cut(s) 818
BstV2I GAAGAC 1 cut(s) 710
BsuRI GGCC 1 cut(s) 330
BtsCI GGATG 3 cut(s) 42, 93, 769
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 4 cut(s) 206, 276, 293, 300
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 2 cut(s) 111, 720
CviAII CATG 4 cut(s) 67, 284, 314, 671
CviJI RGCY 4 cut(s) 31, 306, 330, 374
CviKI_1 RGCY 4 cut(s) 31, 306, 330, 374
CviQI GTAC 2 cut(s) 111, 720
DdeI CTNAG 1 cut(s) 231
DpnI GATC 3 cut(s) 134, 179, 312
DpnII GATC 3 cut(s) 132, 177, 310
Eco130I CCWWGG 1 cut(s) 784
Eco57I CTGAAG 4 cut(s) 396, 489, 531, 654
EcoNI CCTNNNNNAGG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 4 cut(s) 70, 287, 317, 674
FaiI YATR 8 cut(s) 68, 170, 285, 309, 315, 672, 804, 819
FatI CATG 4 cut(s) 66, 283, 313, 670
FbaI TGATCA 1 cut(s) 310
Fnu4HI GCNGC 1 cut(s) 832
FokI GGATG 3 cut(s) 49, 100, 776
Fsp4HI GCNGC 1 cut(s) 832
FspBI CTAG 1 cut(s) 785
GluI GCNGC 1 cut(s) 832
HaeIII GGCC 1 cut(s) 330
HapII CCGG 1 cut(s) 544
Hin1II CATG 4 cut(s) 70, 287, 317, 674
HinfI GANTC 6 cut(s) 245, 356, 482, 524, 557, 650
HpaII CCGG 1 cut(s) 544
HphI GGTGA 1 cut(s) 560
Hpy188I TCNGA 2 cut(s) 391, 655
Hpy188III TCNNGA 1 cut(s) 360
HpyAV CCTTC 1 cut(s) 724
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 7 cut(s) 44, 84, 143, 293, 823, 834, 841
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 4 cut(s) 70, 287, 317, 674
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 3 cut(s) 132, 177, 310
LpnPI CCDG 7 cut(s) 26, 70, 281, 288, 306, 373, 557
Lsp1109I GCAGC 1 cut(s) 818
LweI GCATC 1 cut(s) 754
MaeI CTAG 1 cut(s) 785
MaeIII GTNAC 3 cut(s) 274, 298, 316
MalI GATC 3 cut(s) 134, 179, 312
MboI GATC 3 cut(s) 132, 177, 310
MfeI CAATTG 1 cut(s) 399
MluCI AATT 2 cut(s) 92, 399
MnlI CCTC 6 cut(s) 240, 346, 438, 490, 766, 805
MroXI GAANNNNTTC 1 cut(s) 666
MseI TTAA 1 cut(s) 413
MspI CCGG 1 cut(s) 544
MspR9I CCNGG 2 cut(s) 14, 545
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 1 cut(s) 14
NciI CCSGG 1 cut(s) 545
NdeII GATC 3 cut(s) 132, 177, 310
NlaIII CATG 4 cut(s) 70, 287, 317, 674
NmuCI GTSAC 2 cut(s) 274, 298
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 6 cut(s) 245, 356, 482, 524, 557, 650
PkrI GCNGC 1 cut(s) 833
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 328
PstI CTGCAG 1 cut(s) 46
RsaI GTAC 2 cut(s) 112, 721
RsaNI GTAC 2 cut(s) 111, 720
SaqAI TTAA 1 cut(s) 413
SatI GCNGC 1 cut(s) 832
Sau3AI GATC 3 cut(s) 132, 177, 310
Sau96I GGNCC 1 cut(s) 328
ScrFI CCNGG 2 cut(s) 14, 545
SetI ASST 4 cut(s) 18, 33, 82, 376
SfaNI GCATC 1 cut(s) 754
SfcI CTRYAG 2 cut(s) 42, 768
Sse9I AATT 2 cut(s) 92, 399
SsiI CCGC 2 cut(s) 404, 577
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 2 cut(s) 12, 543
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 135
TasI AATT 2 cut(s) 92, 399
TatI WGTACW 2 cut(s) 110, 719
TfiI GAWTC 6 cut(s) 245, 356, 482, 524, 557, 650
Tru1I TTAA 1 cut(s) 413
Tru9I TTAA 1 cut(s) 413
TscAI CASTG 4 cut(s) 213, 283, 300, 307
TseFI GTSAC 2 cut(s) 274, 298
TseI GCWGC 1 cut(s) 831
Tsp45I GTSAC 2 cut(s) 274, 298
TspDTI ATGAA 7 cut(s) 104, 114, 489, 546, 579, 654, 659
TspRI CASTG 4 cut(s) 213, 283, 300, 307
XagI CCTNNNNNAGG 1 cut(s) 234
XapI RAATTY 1 cut(s) 92
XmaJI CCTAGG 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 666
XspI CTAG 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.