FvH4_4g09190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000274
Physical Location & Seq
Forward (+)
10597306 .. 10597800
495 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09190.t1

Sequence Viewer

Length: 495 bp
ATGAACACAATTAGTGAGGAAGGAAAGAAGAGAAAGAGGATAGTGAATGAAGAGGATGATGGTGTACTGCTGTCTAAACTATTTCTGGGACAGCAAACAAGAAGGAGAAAACAAGAGAAGAAAACTAAGATAGAGGAACCAAAGAAGAAGAAGGCGGAGAAGAAGACATCTGAAATGGAGGAGGAAGAAGAAGATGAGACAGAGAAGCATAACTCAAATCAGTTCAGATCAACATTGCCTGAAATGGACAGTTTTAGAAAAGTATTAGATGAAGAAGCACTGAATGAGCTGAGAAATGGCCCGTTTGGTTTAATTTTTGAAGGATTTTATGAGCATGTCAACAAAAAGCACTTTGGGAAGTCGAACAAGCTCATTGAAACAATCACCGACACTTACAATGAAAAGTTTAATGCATTTGTGATCGGGGAAGGAAGATACAGAATCTCAAGCAGAGATGTATCTGAGATTCTAGGACTTCCTAGAAAAGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

19.19

Weight (kDa)

7.85

Isoelectric Point (pI)

64.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 155
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 1 cut(s) 485
AgsI TTSAA 2 cut(s) 320, 377
AluBI AGCT 2 cut(s) 289, 370
AluI AGCT 2 cut(s) 289, 370
Alw26I GTCTC 1 cut(s) 191
AoxI GGCC 1 cut(s) 298
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 170
BccI CCATC 1 cut(s) 53
BcoDI GTCTC 1 cut(s) 191
BfaI CTAG 2 cut(s) 470, 480
BmgT120I GGNCC 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 138
BpiI GAAGAC 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 233
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 485
BseMI GCAATG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 281, 453
BseRI GAGGAG 1 cut(s) 194
BshFI GGCC 1 cut(s) 300
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 485
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 300
Bsp143I GATC 2 cut(s) 227, 420
BspACI CCGC 1 cut(s) 155
BspANI GGCC 1 cut(s) 300
BspCNI CTCAG 2 cut(s) 282, 454
BspLI GGNNCC 1 cut(s) 138
BsrDI GCAATG 1 cut(s) 233
BssMI GATC 2 cut(s) 227, 420
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 2 cut(s) 23, 45
BstDEI CTNAG 3 cut(s) 126, 290, 462
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 2 cut(s) 230, 423
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 2 cut(s) 227, 420
BstNSI RCATGY 1 cut(s) 338
BstV2I GAAGAC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 300
BtsCI GGATG 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 65
CviAII CATG 1 cut(s) 335
CviJI RGCY 3 cut(s) 289, 300, 370
CviKI_1 RGCY 3 cut(s) 289, 300, 370
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 3 cut(s) 126, 290, 462
DpnI GATC 2 cut(s) 229, 422
DpnII GATC 2 cut(s) 227, 420
Eam1104I CTCTTC 2 cut(s) 23, 45
EarI CTCTTC 2 cut(s) 23, 45
EciI GGCGGA 1 cut(s) 170
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoT22I ATGCAT 1 cut(s) 415
FaeI CATG 1 cut(s) 338
FaiI YATR 3 cut(s) 210, 330, 336
FaqI GGGAC 1 cut(s) 102
FatI CATG 1 cut(s) 334
FokI GGATG 1 cut(s) 68
FspBI CTAG 2 cut(s) 470, 480
HaeIII GGCC 1 cut(s) 300
Hin1II CATG 1 cut(s) 338
HincII GTYRAC 1 cut(s) 340
HindII GTYRAC 1 cut(s) 340
HinfI GANTC 2 cut(s) 441, 466
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 65, 340
Hpy188I TCNGA 3 cut(s) 172, 227, 463
Hpy8I GTNNAC 2 cut(s) 65, 340
HpyAV CCTTC 5 cut(s) 14, 96, 145, 314, 422
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 413
HpyF3I CTNAG 3 cut(s) 126, 290, 462
Hsp92II CATG 1 cut(s) 338
Kzo9I GATC 2 cut(s) 227, 420
LpnPI CCDG 2 cut(s) 71, 252
MaeI CTAG 2 cut(s) 470, 480
MalI GATC 2 cut(s) 229, 422
MboI GATC 2 cut(s) 227, 420
MluCI AATT 2 cut(s) 9, 312
MnlI CCTC 6 cut(s) 10, 30, 46, 127, 172, 175
Mph1103I ATGCAT 1 cut(s) 415
MseI TTAA 2 cut(s) 311, 408
NdeII GATC 2 cut(s) 227, 420
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 1 cut(s) 138
NsiI ATGCAT 1 cut(s) 415
NspI RCATGY 1 cut(s) 338
PfeI GAWTC 2 cut(s) 441, 466
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 299
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SaqAI TTAA 2 cut(s) 311, 408
Sau3AI GATC 2 cut(s) 227, 420
Sau96I GGNCC 1 cut(s) 299
SetI ASST 3 cut(s) 291, 372, 490
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 2 cut(s) 9, 312
SsiI CCGC 1 cut(s) 155
SspMI CTAG 2 cut(s) 470, 480
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 1 cut(s) 362
TasI AATT 2 cut(s) 9, 312
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 2 cut(s) 441, 466
Tru1I TTAA 2 cut(s) 311, 408
Tru9I TTAA 2 cut(s) 311, 408
TscAI CASTG 1 cut(s) 285
TspDTI ATGAA 4 cut(s) 17, 63, 285, 414
TspRI CASTG 1 cut(s) 285
XagI CCTNNNNNAGG 1 cut(s) 483
XceI RCATGY 1 cut(s) 338
XspI CTAG 2 cut(s) 470, 480
Zsp2I ATGCAT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.