Rorug01G0360700

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000274
Physical Location & Seq
Forward (+)
47623544 .. 47625456
1913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0360700.1

Sequence Viewer

Length: 1053 bp
ATGCCTAAGGAGTCAGTTTCTCGGATGCTCACTCAAGCAAAGCCATTTGTGGCTGTGATTCTGATGCAATTTGGGTTAGCAGGAATGTCCATAATTACAAAGTTTGCTCTAAACCAAGGGATGAGCCAACATGTATTAGTTGTCTATAGGCATGCTGTTGCCTTTGTTTTTATAACTCCTTTTGCCCTTTTCTTTGATAGGAAAATAAGGCCAAAGATGAGCCTTTCAGTCTTTGTCAAGATTGTGTTACTCGGCCTATTAGAGCCTGTAATCGACGGGAACTTGTTCTATACTGGGATGAAGCTGACAACAGCAACATTTACAACTGCCATGTGCAATGTTCTTCCTGCCTTTGCATTCATAATGGCTTGGATTTTCAGGCTTGAGATGGTTGATATTAGAAGACTTCACAGCCAGGCAAAGATATTGGGGACCATAGTGACTGTGGGAGGAGCTATGCTTATGACTCTAGTCAATGGACCCATGTTGACTCTTCCATGGACAAGAAGCAGTAGCCATCATCAATCTACAAGTTCCACAGATAGCCAAGATCCCATAAAGGGTGCTCTCATGATTACAACTGGATGTTTCTGCTGGGCTAGTTTCTTCATTCTTCAAGCAATTACTCTAAAAGTATACCCTGCTGAGCTCTCCCTAACAGCTTGGATATGTTTGATGGGTGCGTTGGAAGGTACCGTGGCAGCTCTAGCTTTTGAGTGGCATAACCCTGCAGCTTGGGCCATACACTTGGATTCTAAGTTGTTAGCTGCTGTTTACGGTGGAGTAATATGTTCTGGAGTGACTTATTATATTCAGGGGATGGTAATGAAGGAAAGAGGACCTGTTTTTGTGACTGCATTTAATCCCCTAAGCATGGTCATTGTAGCCATTTTGAGCTCCATCGCCTTGTCCGAAATACTGTACTTGGGAAGGGTAATGGGAGCAATGGTTATAGTAATTGGCCTGTATATGGTCCTCTGGGGTAAAAGTAAGGATCCTCTTCCACAACCAGATTCAGAAGCAACTGAAGATAAAGTAGCCACAACAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

350

Amino Acids

38.32

Weight (kDa)

9.06

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 18 - 156 1.4e-08 EamA-like transporter family
EamA PF00892 187 - 326 8.3e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000274)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06730 FvH4_3g06731 FvH4_3g17150 FvH4_3g24490 FvH4_3g24741 FvH4_3g25201 FvH4_3g29860 FvH4_3g33300 FvH4_3g33780 FvH4_4g04830 FvH4_4g04901 FvH4_4g04910 FvH4_4g09190 FvH4_4g09870 FvH4_4g09880 FvH4_4g10501 FvH4_4g10502 FvH4_4g16800 FvH4_4g16810 FvH4_5g33260 FvH4_6g06051 FvH4_6g06060 FvH4_6g06060 FvH4_6g22011 FvH4_6g34230 FvH4_6g34231 FvH4_6g36690 FvH4_6g36710 FvH4_6g36720 FvH4_6g36740 FvH4_6g36750 FvH4_6g39110 FvH4_7g04250 FvH4_7g04250 FvH4_7g04380 FvH4_7g04390 FvH4_7g09690 FvH4_7g32810 FvH4_7g32820
pyrus_communis pycom02g10120
rosa_chinensis RchiOBHm_Chr0c39g0503121 RchiOBHm_Chr1g0327221 RchiOBHm_Chr1g0358931 RchiOBHm_Chr1g0358941 RchiOBHm_Chr3g0467921 RchiOBHm_Chr4g0402241 RchiOBHm_Chr6g0280581 RchiOBHm_Chr6g0298971 RchiOBHm_Chr7g0226761 RchiOBHm_Chr7g0226841 RchiOBHm_Chr7g0238631 RchiOBHm_Chr7g0243901
rosa_laevigata RLG00000015279 RLG00000029539
rosa_multiflora Rmu_co8451743.1_g000001 Rmu_sc0000270.1_g000001 Rmu_sc0000532.1_g000016 Rmu_sc0000885.1_g000002 Rmu_sc0001913.1_g000026 Rmu_sc0002080.1_g000032 Rmu_sc0002202.1_g000003 Rmu_sc0002202.1_g000006 Rmu_sc0005023.1_g000028 Rmu_sc0006388.1_g000017 Rmu_sc0011497.1_g000007 Rmu_sc0019088.1_g000001 Rmu_ssc0000064.1_g000017 Rmu_ssc0000170.1_g000013
rosa_roxburghii Rroxscaffold_1G00003820 Rroxscaffold_1G00015970 Rroxscaffold_1G00020360 Rroxscaffold_1G00064040 Rroxscaffold_1G00064120 Rroxscaffold_2G00086010 Rroxscaffold_2G00086020 Rroxscaffold_2G00095500 Rroxscaffold_2G00095510 Rroxscaffold_2G00102440 Rroxscaffold_2G00102970 Rroxscaffold_3G00231570 Rroxscaffold_3G00231830 Rroxscaffold_3G00250710 Rroxscaffold_3G00259420 Rroxscaffold_4G00277040 Rroxscaffold_4G00289320 Rroxscaffold_4G00289330 Rroxscaffold_4G00300150 Rroxscaffold_4G00328410 Rroxscaffold_5G00339120 Rroxscaffold_5G00349810 Rroxscaffold_5G00353990 Rroxscaffold_5G00366720 Rroxscaffold_5G00371400 Rroxscaffold_6G00411690 Rroxscaffold_6G00422190 Rroxscaffold_7G00157730 Rroxscaffold_7G00194130 Rroxscaffold_7G00196760 Rroxscaffold_7G00196770 Rroxscaffold_7G00208770
rosa_rugosa Rorug01G0230300 Rorug01G0261600 Rorug01G0360700 Rorug01G0489500 Rorug02G0176000 Rorug02G0337500 Rorug02G0570100 Rorug03G0270700 Rorug04G0114700 Rorug04G0130400 Rorug05G0073400 Rorug05G0565300 Rorug05G0565300
rosa_samantha Rh2BG158000 Rh2DG158000 Rh3AG113900 Rh3BG116900 Rh3CG119800 Rh3DG118800 Rh4BG396700 Rh5BG187400 Rh5BG211200 Rh7AG238800 Rh7AG300700 Rh7BG277000 Rh7CG068900 Rh7CG319200 Rh7CG472000 Rh7DG244600 Rh7DG475400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
Acc65I GGTACC 1 cut(s) 692
AccB1I GGYRCC 1 cut(s) 692
AccI GTMKAC 1 cut(s) 636
AclWI GGATC 3 cut(s) 545, 989, 1002
AcuI CTGAAG 1 cut(s) 1047
AfaI GTAC 2 cut(s) 694, 923
AfiI CCNNNNNNNGG 3 cut(s) 560, 874, 970
AflIII ACRYGT 1 cut(s) 130
AgsI TTSAA 1 cut(s) 617
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 9 cut(s) 304, 455, 649, 662, 704, 710, 734, 767, 897
AluI AGCT 9 cut(s) 304, 455, 649, 662, 704, 710, 734, 767, 897
Alw21I GWGCWC 3 cut(s) 568, 651, 899
AlwI GGATC 3 cut(s) 545, 989, 1002
AoxI GGCC 4 cut(s) 209, 253, 738, 961
ApeKI GCWGC 3 cut(s) 701, 731, 767
Asp700I GAANNNNTTC 1 cut(s) 284
Asp718I GGTACC 1 cut(s) 692
AspS9I GGNCC 5 cut(s) 432, 479, 738, 839, 973
AvaII GGWCC 4 cut(s) 432, 479, 839, 973
AxyI CCTNAGG 1 cut(s) 6
BamHI GGATCC 1 cut(s) 994
BanI GGYRCC 1 cut(s) 692
BanII GRGCYC 2 cut(s) 651, 899
BbsI GAAGAC 1 cut(s) 409
Bbv12I GWGCWC 3 cut(s) 568, 651, 899
BbvI GCAGC 3 cut(s) 713, 743, 754
BccI CCATC 5 cut(s) 382, 525, 670, 814, 908
BciT130I CCWGG 1 cut(s) 416
BfaI CTAG 3 cut(s) 470, 600, 707
BfmI CTRYAG 2 cut(s) 145, 729
BisI GCNGC 3 cut(s) 702, 732, 768
BlpI GCTNAGC 1 cut(s) 645
BlsI GCNGC 3 cut(s) 703, 733, 769
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 4 cut(s) 432, 479, 839, 973
BmgT120I GGNCC 5 cut(s) 432, 479, 738, 839, 973
BmiI GGNNCC 4 cut(s) 433, 481, 694, 996
BmrFI CCNGG 1 cut(s) 416
BmrI ACTGGG 1 cut(s) 303
BmsI GCATC 2 cut(s) 15, 54
BmuI ACTGGG 1 cut(s) 303
BoxI GACNNNNGTC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 409
BpmI CTGGAG 1 cut(s) 816
Bpu10I CCTNAGC 1 cut(s) 869
Bpu1102I GCTNAGC 1 cut(s) 645
BpuEI CTTGAG 2 cut(s) 18, 404
BsaJI CCNNGG 3 cut(s) 115, 497, 696
BsaXI ACNNNNNCTCC 2 cut(s) 933, 963
Bsc4I CCNNNNNNNGG 3 cut(s) 560, 874, 970
Bse1I ACTGG 2 cut(s) 298, 586
Bse21I CCTNAGG 1 cut(s) 6
Bse3DI GCAATG 2 cut(s) 343, 951
BseBI CCWGG 1 cut(s) 416
BseDI CCNNGG 3 cut(s) 115, 497, 696
BseGI GGATG 5 cut(s) 30, 126, 303, 590, 825
BseLI CCNNNNNNNGG 3 cut(s) 560, 874, 970
BseMI GCAATG 2 cut(s) 343, 951
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 2 cut(s) 298, 586
BseRI GAGGAG 1 cut(s) 465
BseXI GCAGC 3 cut(s) 713, 743, 754
BseYI CCCAGC 1 cut(s) 594
BshFI GGCC 4 cut(s) 211, 255, 740, 963
BshNI GGYRCC 1 cut(s) 692
BsiHKAI GWGCWC 3 cut(s) 568, 651, 899
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 560, 874, 970
BsmFI GGGAC 1 cut(s) 445
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 4 cut(s) 211, 255, 740, 963
Bsp1286I GDGCHC 3 cut(s) 568, 651, 899
Bsp143I GATC 2 cut(s) 550, 994
Bsp1720I GCTNAGC 1 cut(s) 645
Bsp19I CCATGG 1 cut(s) 497
BspANI GGCC 4 cut(s) 211, 255, 740, 963
BspCNI CTCAG 1 cut(s) 637
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 4 cut(s) 433, 481, 694, 996
BspMAI CTGCAG 1 cut(s) 733
BspPI GGATC 3 cut(s) 545, 989, 1002
BspT107I GGYRCC 1 cut(s) 692
BsrDI GCAATG 2 cut(s) 343, 951
BsrI ACTGG 2 cut(s) 298, 586
BssECI CCNNGG 3 cut(s) 115, 497, 696
BssMI GATC 2 cut(s) 550, 994
BssNAI GTATAC 1 cut(s) 637
BssT1I CCWWGG 2 cut(s) 115, 497
Bst1107I GTATAC 1 cut(s) 637
Bst2UI CCWGG 1 cut(s) 416
Bst4CI ACNGT 5 cut(s) 445, 697, 779, 921, 1048
Bst6I CTCTTC 2 cut(s) 498, 1005
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 4 cut(s) 6, 645, 756, 869
BstDSI CCRYGG 2 cut(s) 497, 696
BstF5I GGATG 5 cut(s) 30, 126, 303, 590, 825
BstKTI GATC 2 cut(s) 553, 997
BstMBI GATC 2 cut(s) 550, 994
BstMWI GCNNNNNNNGC 2 cut(s) 707, 737
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 2 cut(s) 134, 155
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 2 cut(s) 145, 729
BstV1I GCAGC 3 cut(s) 713, 743, 754
BstV2I GAAGAC 1 cut(s) 409
BstX2I RGATCY 2 cut(s) 550, 994
BstXI CCANNNNNNTGG 1 cut(s) 748
BstYI RGATCY 2 cut(s) 550, 994
BstZ17I GTATAC 1 cut(s) 637
Bsu36I CCTNAGG 1 cut(s) 6
BsuRI GGCC 4 cut(s) 211, 255, 740, 963
BtgI CCRYGG 2 cut(s) 497, 696
BtgZI GCGATG 1 cut(s) 886
BtsCI GGATG 5 cut(s) 30, 126, 303, 590, 825
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 1 cut(s) 570
Cfr13I GGNCC 5 cut(s) 432, 479, 738, 839, 973
Csp6I GTAC 2 cut(s) 693, 922
CviAII CATG 7 cut(s) 131, 152, 331, 484, 498, 571, 874
CviQI GTAC 2 cut(s) 693, 922
DdeI CTNAG 4 cut(s) 6, 645, 756, 869
DpnI GATC 2 cut(s) 552, 996
DpnII GATC 2 cut(s) 550, 994
Eam1104I CTCTTC 2 cut(s) 498, 1005
EarI CTCTTC 2 cut(s) 498, 1005
Ecl136II GAGCTC 2 cut(s) 649, 897
Eco130I CCWWGG 2 cut(s) 115, 497
Eco24I GRGCYC 2 cut(s) 651, 899
Eco47I GGWCC 4 cut(s) 432, 479, 839, 973
Eco53kI GAGCTC 2 cut(s) 649, 897
Eco57I CTGAAG 1 cut(s) 1047
Eco81I CCTNAGG 1 cut(s) 6
EcoICRI GAGCTC 2 cut(s) 649, 897
EcoO109I RGGNCCY 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 414
EcoT14I CCWWGG 2 cut(s) 115, 497
EcoT38I GRGCYC 2 cut(s) 651, 899
ErhI CCWWGG 2 cut(s) 115, 497
FaeI CATG 7 cut(s) 134, 155, 334, 487, 501, 574, 877
FaqI GGGAC 1 cut(s) 445
FatI CATG 7 cut(s) 130, 151, 330, 483, 497, 570, 873
FblI GTMKAC 1 cut(s) 636
Fnu4HI GCNGC 3 cut(s) 702, 732, 768
FokI GGATG 5 cut(s) 37, 133, 310, 597, 832
FriOI GRGCYC 2 cut(s) 651, 899
Fsp4HI GCNGC 3 cut(s) 702, 732, 768
FspBI CTAG 3 cut(s) 470, 600, 707
GluI GCNGC 3 cut(s) 702, 732, 768
GsaI CCCAGC 1 cut(s) 598
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 4 cut(s) 211, 255, 740, 963
Hin1II CATG 7 cut(s) 134, 155, 334, 487, 501, 574, 877
HincII GTYRAC 1 cut(s) 489
HindII GTYRAC 1 cut(s) 489
HinfI GANTC 6 cut(s) 11, 58, 466, 490, 752, 1013
Hpy166II GTNNAC 3 cut(s) 489, 637, 775
Hpy188I TCNGA 4 cut(s) 24, 63, 913, 1018
Hpy188III TCNNGA 3 cut(s) 238, 571, 795
Hpy8I GTNNAC 3 cut(s) 489, 637, 775
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 3 cut(s) 683, 823, 924
HpyCH4III ACNGT 5 cut(s) 445, 697, 779, 921, 1048
HpyCH4V TGCA 5 cut(s) 67, 336, 356, 731, 857
HpyF10VI GCNNNNNNNGC 2 cut(s) 707, 737
HpyF3I CTNAG 4 cut(s) 6, 645, 756, 869
Hsp92II CATG 7 cut(s) 134, 155, 334, 487, 501, 574, 877
KpnI GGTACC 1 cut(s) 696
Kzo9I GATC 2 cut(s) 550, 994
LmnI GCTCC 3 cut(s) 452, 902, 941
Lsp1109I GCAGC 3 cut(s) 713, 743, 754
LweI GCATC 2 cut(s) 15, 54
MaeI CTAG 3 cut(s) 470, 600, 707
MaeIII GTNAC 4 cut(s) 246, 439, 799, 850
MalI GATC 2 cut(s) 552, 996
MboI GATC 2 cut(s) 550, 994
MboII GAAGA 7 cut(s) 335, 414, 485, 598, 605, 992, 1040
MflI RGATCY 2 cut(s) 550, 994
MhlI GDGCHC 3 cut(s) 568, 651, 899
MluCI AATT 4 cut(s) 68, 93, 621, 957
MlyI GAGTC 3 cut(s) 20, 460, 484
MmeI TCCRAC 1 cut(s) 666
MnlI CCTC 4 cut(s) 443, 830, 986, 1008
MroXI GAANNNNTTC 1 cut(s) 284
MseI TTAA 2 cut(s) 861, 1051
MspR9I CCNGG 1 cut(s) 416
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 2 cut(s) 707, 737
NcoI CCATGG 1 cut(s) 497
NdeII GATC 2 cut(s) 550, 994
NlaIII CATG 7 cut(s) 134, 155, 334, 487, 501, 574, 877
NlaIV GGNNCC 4 cut(s) 433, 481, 694, 996
NmeAIII GCCGAG 1 cut(s) 231
NmuCI GTSAC 3 cut(s) 439, 799, 850
NspI RCATGY 2 cut(s) 134, 155
PaeI GCATGC 1 cut(s) 155
PagI TCATGA 1 cut(s) 570
PciI ACATGT 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 909
PctI GAATGC 1 cut(s) 356
PdmI GAANNNNTTC 1 cut(s) 284
PfeI GAWTC 3 cut(s) 58, 752, 1013
PkrI GCNGC 3 cut(s) 703, 733, 769
PleI GAGTC 3 cut(s) 19, 460, 484
PpsI GAGTC 3 cut(s) 19, 460, 484
PpuMI RGGWCCY 1 cut(s) 839
PscI ACATGT 1 cut(s) 130
PshAI GACNNNNGTC 1 cut(s) 470
PsiI TTATAA 1 cut(s) 173
Psp124BI GAGCTC 2 cut(s) 651, 899
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 594
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 4 cut(s) 433, 481, 694, 996
PspPI GGNCC 5 cut(s) 432, 479, 738, 839, 973
PspPPI RGGWCCY 1 cut(s) 839
PstI CTGCAG 1 cut(s) 733
PsuI RGATCY 2 cut(s) 550, 994
RsaI GTAC 2 cut(s) 694, 923
RsaNI GTAC 2 cut(s) 693, 922
SacI GAGCTC 2 cut(s) 651, 899
SaqAI TTAA 2 cut(s) 861, 1051
SatI GCNGC 3 cut(s) 702, 732, 768
Sau3AI GATC 2 cut(s) 550, 994
Sau96I GGNCC 5 cut(s) 432, 479, 738, 839, 973
SchI GAGTC 3 cut(s) 20, 460, 484
ScrFI CCNGG 1 cut(s) 416
SduI GDGCHC 3 cut(s) 568, 651, 899
SfaNI GCATC 2 cut(s) 15, 54
SfcI CTRYAG 2 cut(s) 145, 729
SinI GGWCC 4 cut(s) 432, 479, 839, 973
SmlI CTYRAG 2 cut(s) 33, 383
SmoI CTYRAG 2 cut(s) 33, 383
SphI GCATGC 1 cut(s) 155
Sse9I AATT 4 cut(s) 68, 93, 621, 957
SspMI CTAG 3 cut(s) 470, 600, 707
SstI GAGCTC 2 cut(s) 651, 899
StyD4I CCNGG 1 cut(s) 414
StyI CCWWGG 2 cut(s) 115, 497
TaaI ACNGT 5 cut(s) 445, 697, 779, 921, 1048
TaqI TCGA 1 cut(s) 273
TasI AATT 4 cut(s) 68, 93, 621, 957
TatI WGTACW 1 cut(s) 921
TfiI GAWTC 3 cut(s) 58, 752, 1013
Tru1I TTAA 2 cut(s) 861, 1051
Tru9I TTAA 2 cut(s) 861, 1051
TseFI GTSAC 3 cut(s) 439, 799, 850
TseI GCWGC 3 cut(s) 701, 731, 767
Tsp45I GTSAC 3 cut(s) 439, 799, 850
TspDTI ATGAA 4 cut(s) 314, 349, 598, 842
VpaK11BI GGWCC 4 cut(s) 432, 479, 839, 973
XceI RCATGY 2 cut(s) 134, 155
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 636
XmnI GAANNNNTTC 1 cut(s) 284
XspI CTAG 3 cut(s) 470, 600, 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.